Singulisphaera acidiphila: Sinac_0499
Help
Entry
Sinac_0499 CDS
T02393
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
saci
Singulisphaera acidiphila
Pathway
saci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sinac_0499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saci03021
]
Sinac_0499
03400 DNA repair and recombination proteins [BR:
saci03400
]
Sinac_0499
Enzymes [BR:
saci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sinac_0499
Transcription machinery [BR:
saci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sinac_0499
DNA repair and recombination proteins [BR:
saci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sinac_0499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
SHOCT
Motif
Other DBs
NCBI-ProteinID:
AGA24934
UniProt:
L0D6B1
LinkDB
All DBs
Position
complement(640759..645042)
Genome browser
AA seq
1427 aa
AA seq
DB search
MSMGESAYDRINDYGAVKIGLASPYDIRSWSFGEVKKPETINYRTYRPEKDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAMPSR
LGTLLDMKTSSLERIIYFQDYVVIDPGDTPLKERQLLTEEDFRKSREMFGDTFQADMGAD
AVRKLLARLDLVSLSKQLRTELGETSSKQKTKDLTKRLKVVEALRDSDNRPEWMVLECIP
VIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEKRMLQQAV
DALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPDLRL
HQCGLPKKIALELFQPFIIRRLKELGHADTIKSAKKMLERKVEEVWDILEEVIHNHPVLL
NRAPTLHRMGIQAFEPVLVEGNAIRIHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAMTL
MMSTNNIFSPANGNPIISPTQDIVMGSYYVTVQRPGEPGEGMTFSSANEVFLAFSQKKVG
VHAMINLRLPVHKKLRGDGEKEFTPGMVIKTTTGRVIFNDILHPKMPYYNTALGQKQLQG
IIADCYQILGRAETINLLDNMKDLGFRESTRSGLSFATDDLKTPMTKDAILSETEKEVAK
AAKLYQRGIITEQERYNKVLDAWTHARERITNEMMEQLRHDVRNGQVYLNPIFLMADSGA
RGGVEQIRQLAGMRGLMAKPSGKIIETPIKANFREGLSVLEYFSSTHGARKGLADTALKT
ADSGYLTRKLADVAQNVVITMEDCGTSQGITKGVIYKGEKVEVSLVQSIRGRVSRVNIVN
PITDEIVVKENDMITVAAAKKLEDMQIEKIQVRSPMTCEATLGICRRCYGMDLATGQLVE
PGMAVGIIAAQSIGEPGTQLTMRTFHIGGVATRGVEEKDVKSKREGKIKYVGINLVTNDE
GKKIALSRNGEIQILDPKGRELEKYDVPDGAAMLVEDGSTVARGTMLCEWDPHNIPILAE
VGGKVRYEDVIENETMRIEIDPSGHTRRTIMEHKGDLHPQILIEDAEGHILAYNYIPEGA
GIEVQQGAQITAGTLLAKTPREVGGTQDITGGLPRVTELFEARRPKEPAVIAEIDGRVEL
LDEKRRGKRTIIVKNESGIEREHLVPHGKYLRVHGGDRVRAGDALVEGPLVPHDILRISG
EEAVQRYLLREIQNVYRSQRVEIDDKHLEIIVAQMLRKVRVESVGDTGLLPGSVIDKFDF
RGKNLELMTCVKVKDPGESDFRQGDIVPRDHFDQENLRVETASGKKAEWIRPKPAAASTQ
LLGITKAAVQSDSFISAASFQETTKVLTEAALAGKVDYLVGLKENVILGHLVPAGTGFKS
HQDAEVRIRPEALEALAEKGPGYSRYPRDETPSPAAAAPAAAGKASE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatgggcgaaagtgcctacgatcgtatcaatgattacggcgccgtcaagatcggg
ctggccagcccgtacgacatccggagttggtccttcggcgaggtcaagaagccggaaacg
atcaactaccggacctaccgccccgaaaaggacggcctcttctgcgagcgaattttcgga
cccgagaaagactgggaatgcgcctgcggtaagtaccgcggcatgaagtacaaggggatg
atctgcgaccgctgcggcgtgaaagtcacgcactcgcgggtccgccgcaagcggatgggc
cacatcgagctggccgcgccggtcgtccacatctggttcttcaaggcgatgcccagtcgc
ttggggaccctgctggacatgaagacgtccagcctcgaacgcatcatctacttccaggat
tacgtcgtcatcgaccccggtgacacccccttgaaggaacggcagctcctcaccgaggaa
gacttccgcaagtcgcgcgagatgttcggcgacaccttccaggccgacatgggggccgac
gccgtccgcaaactcctggcccggctcgacctggtcagcctctccaagcaactgcggacc
gagctcggcgaaacctcgagcaagcagaagaccaaggacctgaccaagcggctgaaggtc
gtcgaggcgctccgcgatagcgacaaccgacccgagtggatggtcctcgagtgcatcccg
gtcatcccgccggacttgcgccccttggtcttgctcgactcgggcaacttcgccaccagc
gacttgaacgacctctaccggcgcatcatcaaccggaacaaccggctcaagaagctggtc
gacctgaacgcgcccgaggtcatcatccgcaacgagaagcggatgctccagcaggcggtc
gacgccctgttcgacaacaaccgctgcaagcggcccgtgctcggctcgagcaaccggccg
ttgaagtcgttgaccgacatgatcaagggtaagcagggtcggttccgcgaaaacttgctc
ggcaagcgcgtggactactcggcccgctcggtgatcgtcgtcggccccgacctccggctc
caccagtgcggccttcccaagaagatcgccctggagctgttccagccgttcatcatccgc
cggctcaaggagctgggtcacgccgacacgatcaaatcggccaagaagatgcttgagcgc
aaggtcgaagaggtgtgggatatcctcgaagaggtgatccacaaccacccggtcttgctc
aaccgagccccgaccctgcaccgcatgggaattcaggcgttcgagccggtcctggtcgaa
ggtaacgcgatccggatccacccgctcgtctgtaaagggttcaacgccgacttcgacggc
gaccagatggccgtccacttgcccctctccatcgaagcgcaggtcgaggcgatgacgctg
atgatgtcgaccaacaacatcttcagccccgccaacggcaacccgatcatcagcccgacc
caggacatcgtcatggggtcgtactatgtgacggtgcagcgccccggcgagcccggcgaa
gggatgaccttctccagcgccaacgaggtcttcctcgccttcagtcagaagaaggtcggc
gtccatgcgatgatcaatctccgcctcccggttcacaagaaactgcgaggggacggcgag
aaggaattcacccccggcatggtcatcaagaccaccaccggtcgggtgatcttcaacgac
atccttcaccccaagatgccgtactacaacacggccctgggtcagaagcagctccaaggg
atcatcgccgactgctaccagatcctcggccgagccgagacgatcaacctgctcgacaac
atgaaggacctcgggttccgcgaatcgacacgctcgggcctgtcgttcgccaccgacgac
ctcaagaccccgatgaccaaggacgcgatcctctcggagaccgagaaggaagtggccaag
gccgccaagctctatcagcgcggaatcatcacggagcaggagcggtataacaaggtcctc
gacgcctggacccacgctcgtgagcggattacgaacgagatgatggagcagctccgtcac
gacgtccgcaacggccaggtctacctgaacccgatcttcctgatggccgactcgggtgct
cgtggtggcgtcgagcagattcgccagctcgccgggatgcgaggtctgatggccaagccc
tcgggcaagatcatcgagaccccgatcaaggccaacttccgcgaaggcctctcggtgctc
gagtacttcagctcgacccacggggctcgaaagggcttggccgacacggccttgaagacg
gccgactcgggttacctgacccgtaagctggccgacgtggcgcagaacgtcgtgatcacg
atggaagactgcggcacctcccaggggatcaccaagggcgtcatctacaagggcgaaaag
gtcgaggtcagcctcgtccagtcgattcgaggccgagtcagccgggtcaacatcgtgaac
cccatcaccgacgagatcgtggtgaaggaaaacgatatgatcacggtggccgcggccaag
aagctcgaggacatgcagatcgagaagatccaggtccgcagcccgatgacctgcgaggca
accctcgggatctgccgccgctgctacggaatggacctggcgaccggccagctcgtcgag
ccgggcatggccgtcgggatcatcgccgctcagtcgatcggcgagccgggcacccagctc
accatgcgtaccttccacatcggcggcgtggccacccgcggcgtcgaagagaaggacgtc
aagagcaagcgggaagggaagatcaagtacgtcggcatcaacctggtgaccaacgacgaa
gggaagaagatcgccctctcgcgaaacggcgaaatccagatcctcgaccccaagggccgc
gagctcgagaagtacgacgtgcccgacggtgccgccatgctcgtcgaggacggctcaacg
gtcgcccgtggcacgatgctctgcgagtgggacccgcacaacatcccgattctcgcggaa
gtcggcggtaaggtccgctacgaagacgtcatcgaaaacgagacgatgcgaatcgagatc
gacccctcgggccacacccggcggacgatcatggagcacaagggggacctgcacccgcag
atcctcatcgaggacgccgaagggcacatcctcgcctacaactacatccccgaaggggcc
ggtatcgaagttcagcaaggagcccagatcactgcgggtaccttgctggccaagacgccg
cgagaggtgggtggtacccaggacatcaccggtggtctcccgcgagtcaccgagctgttc
gaggcccggcgacccaaggagccggcggtcatcgccgagatcgacggccgcgtcgaactg
ctggacgagaagcgccgcggtaagcggacgatcatcgtcaagaacgagagcggcatcgag
cgcgagcacctggtgccgcacggtaagtaccttcgagttcacggtggcgaccgggtccgg
gccggcgacgccctggtcgaagggccgctggtgccgcacgacatcctccggatctcgggc
gaggaggcggttcagcgctacctcctccgcgagattcagaacgtctaccgttcccagcgt
gtcgaaatcgacgacaaacacctcgagatcatcgtcgcccagatgctccgcaaggtccgc
gtcgaaagcgtcggtgataccggcttgctgccgggctcggtcatcgacaagttcgatttc
cggggcaagaacctcgagttgatgacctgcgtcaaggtcaaggacccgggcgagagcgac
ttccgccagggcgacatcgttccccgcgaccacttcgaccaggaaaacctccgggtcgaa
acggccagcggcaagaaagccgagtggatccgtcccaagccggccgccgcgagcacccag
ctcctcgggatcaccaaggcagccgtgcagtcggacagcttcatctcggcggccagcttc
caggaaacgaccaaggtgctgaccgaggccgcgcttgcgggcaaggtcgactacctcgtc
ggcctgaaagaaaacgtcatcctcggccacctcgtcccggccggaaccggcttcaagtcc
caccaggacgccgaagtccgcatccgacccgaggcgctcgaggcgctcgccgagaagggt
cccggctacagccgctatcctcgcgacgagacgcccagccctgcggcggctgcccctgcg
gccgccggcaaggcgagcgagtaa
DBGET
integrated database retrieval system
