Singulisphaera acidiphila: Sinac_3259
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Entry
Sinac_3259 CDS
T02393
Name
(GenBank) ribonuclease G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
saci
Singulisphaera acidiphila
Pathway
saci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sinac_3259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saci03019
]
Sinac_3259
03009 Ribosome biogenesis [BR:
saci03009
]
Sinac_3259
Enzymes [BR:
saci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sinac_3259
Messenger RNA biogenesis [BR:
saci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sinac_3259
Ribosome biogenesis [BR:
saci03009
]
Prokaryotic type
rRNA processing factors
Sinac_3259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGA27530
UniProt:
L0DF99
LinkDB
All DBs
Position
complement(4083975..4087280)
Genome browser
AA seq
1101 aa
AA seq
DB search
MKKEMLINVLQPEECRIAIVEDGVLEELYVERTSHESYTGNIYKGKIVNLEPAIQAAFVD
FSVGRNGFLHVSDVEPQYFQRHQAAEAEAAGPSSTSTTAPGSNREPRRDRDREPNRRGRT
EDRDPGSSSGSSRPEDRYRDRERPELSEKGRRDRSEPRSFGEGLADDDIFTSRSSSSSSS
ARSTPPERVDPRRGRPEPPLPSWSDEVTHARAPEHAPRGFEPDEPRSRTSRAAEPFDPDL
PPSRTQRSSRQAPPPSRPADPEIVDSGRGRIVDAELSPETQAPRDSRRSRGRGRPERPAP
EPEPLFEAEVEPASEPVFEDIPETPRRRGGRAAIRSRGGERESTGERPREAAPERSRPPV
VERSPEIEVERPRERLREPERIREPERGREPERTREPERTREPERFRESERVREPERGRE
PERTREPERTREPERVREPERTRAPERARGPEAEVPRERKAHGRAGEPGYVPRRERSRAP
ESTFGSDIPPASLEWAELAAESELDIDEIEGEGGPDELGPESGKLDGPRRRRRRRGRRRD
REQPEGTGTPAASPRPAFGPDVDDEDELEVDEPLEREAVRHGSVEDEEHLAIDDFDFGDE
HIGPDDEHADEFLEDHAPVAVDEEIDPELEEEIRREIAEIAELEREMGLRGPVEARPRRG
DGEPDTGRGGRFTRGRGLVKPPIQEVFRRGDEVLVQVIKESIGTKGPTLSTYISIPGRYL
VLMPGLNRVGVSRKIADETQRRKLREIMTELNPPKGLGFIVRTAGLERTKRELARDLAYL
LRLWKVILRRIKKAKTPAPIYQESDMITRTIRDIFTSEIDTIWIDEPAAFERAQEFLKVV
MPRFVNRLKLYDEKVPLFHKYGIEDEIAKIQRRTVPLPEGGSIVIDQTEALVAIDVNSGN
FRVENDAEKTAYEMNLRAAKEIARQLRLRDLGGVIVNDFIDMRDERHRRGVEKALRDAIK
RDRARTKVLRMSAFGLIEMTRQRIRPSLKRSVYEDCSNCTGAGVVKTVESMSIDVMRLLA
LASHRDDIRRVSVGVSQAVATYLNNRKRREITRIETEANMTIQIRTEPDAAAEHLQLECY
DGNNSEIRLFPPPAPTHRGRH
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagaaatgctgatcaacgtgctccagcccgaggaatgcagaatcgccatcgtt
gaggatggcgtccttgaggagctgtacgtcgagcgcaccagccacgagagctataccggt
aatatctacaaaggcaagatcgttaacctcgaaccggccattcaggccgccttcgtcgat
ttttcggtcggccgcaacggcttcctccacgtgtccgacgtggagccgcaatattttcag
cgtcaccaggccgccgaggccgaggcggctggcccttcctcaacctcaaccacggccccc
ggctcgaatcgtgagccgcgtcgtgatcgtgatcgcgagcctaaccgtcgaggccggacc
gaagatcgcgacccgggttcgtcgtccggctcctctcgtcccgaagaccggtatcgtgat
cgcgagcggcccgaactttcggaaaaaggccggcgcgaccgctcggagccccgcagcttc
ggcgaaggactggccgatgacgatatctttacgtcccgatcatcctccagcagctcatcg
gctcgctccacccctcccgaacgcgtcgacccgcgccgtggtcggcccgaaccgcccctg
ccctcctggtcggacgaggtgacccatgcgcgcgctccggagcacgcgccgaggggtttc
gagcccgacgagcctcgctctcggaccagccgggccgctgagccgttcgatcccgacctc
ccgccgagccgcacccagcgatcatcccgccaagcacctcctccgagtcggcccgccgac
cccgagatcgtggattcgggacgtgggcggatcgttgacgccgaactctcccccgaaacc
caggctccgcgcgattcccgacgttctcggggacgcggtcggcccgagcgccccgcgccg
gaacccgaacccttgttcgaggctgaggtcgaaccggcgtcggagccggtctttgaagac
attcccgagacccctcgtcgtcgcggcggtcgagccgcaatccgctcacgcggcggcgaa
cgcgagtccaccggcgaacggccccgcgaagcggcccccgagcgttccaggccgcccgtg
gtcgaacgatcccccgaaatcgaggtcgaacgaccccgggagcggttgcgcgaacccgag
cgaatccgagaacccgaacgcggccgggagcccgaacgaaccagggagcccgagcgaact
cgagagcctgaacgattccgtgaatccgaacgtgttcgtgaacccgaacgcggccgagag
cccgagcgaactcgagagcctgaacgcactcgcgaacctgaacgtgttcgtgaacccgag
cgaacccgcgctccggagcgtgctcgcggaccggaagcggaagttcctcgcgagaggaag
gcacacggccgcgccggtgagccggggtacgttccccgccgcgaacgctcacgagcgcct
gagtccaccttcggctccgacatcccccctgcttctctcgaatgggcggagctggcggcc
gagtccgaactcgacatcgacgagattgagggtgagggaggcccggacgaattggggccg
gaatcgggcaagctcgacgggcctcgccgccgccgccgtcgccgtgggcgccgtcgcgac
cgtgagcagcccgagggaaccggaaccccggcggcgtcgccacgtcccgcctttggccct
gacgtggacgacgaagacgagcttgaggtcgatgagccgctcgagcgcgaagccgttcgc
catggaagtgttgaggacgaagagcacctcgcgatcgacgactttgacttcggcgacgag
cacatcgggccggatgatgagcacgccgacgagttcctcgaggatcatgctcccgtcgcc
gtcgatgaagagatcgacccggagctcgaggaagagattcgcagagagatcgccgagatc
gccgagctggagcgagaaatgggcctgcgagggcccgtcgaagctcgtccacgccggggc
gacggcgaaccggacaccggacgcggcggtcggttcacccggggccgagggctggtcaag
cccccgatccaggaggtcttccgtcgtggcgacgaagtgctcgttcaggtcatcaaagag
agcattggcaccaaaggcccgaccctctcgacctacatcagcatcccaggccgttacctc
gtgctgatgcccggcctgaatcgggtgggggtctcgcgcaagatcgctgacgaaactcag
cgccgcaagctccgcgagatcatgaccgagctgaaccctcccaagggactcgggttcatc
gtgcggaccgcgggcctggaacggaccaagcgtgagctggcccgcgacctggcttacctg
ctccggctctggaaggtcatcctccgccggatcaagaaggccaagacccccgcgccgatc
taccaggaatcggacatgatcacgcggaccatccgcgatatcttcacgtccgagatcgac
acgatctggatcgacgaaccggcggcgttcgagcgtgcccaggagttcctcaaggtcgtc
atgccccggttcgtcaaccggctgaagctctatgacgagaaggtgccgctcttccacaag
tacggcatcgaagatgagatcgccaagatccagcgtcggaccgttcccctccccgagggg
ggatcgatcgtcatcgaccagaccgaggcgctcgtcgccatcgacgtgaactcgggcaac
ttccgggtcgagaacgacgcggaaaagaccgcctacgagatgaacctccgggcggccaag
gagattgcccgccagcttcgactccgcgacctcggcggagtgatcgtcaacgactttatc
gacatgcgtgacgagcggcaccgccggggggttgagaaggcccttcgcgatgccatcaag
cgtgaccgggcgcgcaccaaggtcctccggatgagcgcgttcgggctcatcgagatgacc
cgccagcgcattcggcctagcctgaagcggtccgtctacgaagactgctccaattgcacg
ggggccggcgtcgtcaaaaccgtcgagagcatgtcgatcgacgtgatgcggctgctggca
ttggcctcgcaccgtgatgatatcaggcgcgtttcggttggggtcagccaggccgtggcg
acctacctgaataatcgcaaacgccgcgagatcacccggatcgagaccgaagccaacatg
acgatccagattcggaccgagccggatgcggccgccgagcatctccaactcgagtgctac
gacggtaacaacagcgaaatccgactcttcccgccccctgccccaacccatcgcggccgg
cactaa
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