Singulisphaera acidiphila: Sinac_4666
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Entry
Sinac_4666 CDS
T02393
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
saci
Singulisphaera acidiphila
Pathway
saci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sinac_4666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saci03019
]
Sinac_4666
03400 DNA repair and recombination proteins [BR:
saci03400
]
Sinac_4666
Enzymes [BR:
saci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sinac_4666
Messenger RNA biogenesis [BR:
saci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sinac_4666
DNA repair and recombination proteins [BR:
saci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sinac_4666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
TrmB
AAA_22
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AGA28843
UniProt:
L0DJ43
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All DBs
Position
5779162..5781090
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AA seq
642 aa
AA seq
DB search
MSDIDDARRTLRETFGFTQFRGGQEQAITALLEGRPVLAVFPTGAGKSLCYQLPALLLDG
LTVVVSPLIALMKDQVDFLVRRGVAAARLDSTLEPVEARRILDDLRADRLKLLYVAPERL
ASERFFQTLSKTKVALLAVDEAHCISEWGHNFRPEYLKLARLARRLGIARVLALTATATP
DVASQVARAFGIADADVVITGFHRPNLELHANACAAEDRHALLLKSLKAGLAGPTIVYVT
LQKTAEDLADFLAGQGFDAMAYHAGMNDERRHVVQDQFMACEAGIVVATIAFGMGIDKSN
IRAVYHFNLPKSLENFAQEIGRAGRDGEPARCELFACAEDVLTLGNFTYGDTPTPEAIAD
LLKEILGLGPTFDISAYDLSQRHDIRQLVVQTLMTYLELEGILEATGPFYSDCKFRPLRS
SGEILAQYDAPRAAFLRQVFRQARPGKIWFALDVSEVARNLEETRERISAALNHLEEKGD
VELQLAGLRQGYRRTTGDPDLDELRERLVARFLDRERRDIARVHSVLEYAQAEGCLTGRL
LAYFGETLVGDCGHCARCLGEPPIPLPPVPERALGSLEQEMVERVRSERHKALTSSRQLT
RFLCGLVSPASSRSKLAKHPQFAALADVPFPRVLDFVKSVYN
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatatcgatgatgcccggcggacgcttcgggagaccttcggcttcacccagttt
cgcggcgggcaggaacaggcgatcaccgcactccttgagggccgcccggtcctggccgtc
tttccgaccggcgctggcaaaagcctttgctatcaactccccgcgctcttgctcgacggc
ctgacagtcgtcgtctctcctctgatcgcgctcatgaaggaccaggtggatttcctcgtc
aggcgtggcgtcgccgccgcccgacttgattccaccctcgagccggtcgaagcacgccgg
atcctcgacgatctccgggccgatcggctcaaactgctctacgtggcccccgagcggctc
gcgagtgagcggttctttcagaccttgagcaagaccaaggtcgcgcttctggcggtggac
gaggcgcactgtatcagcgagtggggtcacaacttccggcctgaatacctcaagcttgcc
cgccttgccaggcggcttggcatcgctcgagtactggccctgaccgcgaccgccacgccg
gatgtggcaagccaggtcgcccgcgcgttcggcatcgccgatgctgacgtcgtgatcacc
gggttccaccgcccgaatttggaactccacgccaacgcttgcgctgcggaggatcggcac
gcgctcttgctcaagagccttaaagcaggattggcgggaccaacgatcgtgtacgtcacc
ctccagaaaacggccgaggatcttgccgacttcctcgccggacaagggttcgacgcgatg
gcctatcacgcggggatgaacgacgagcggcggcatgtcgtccaggatcaattcatggcc
tgcgaggcaggcatcgtggtggcgacgatcgcctttggcatggggatcgacaagtcgaac
atccgcgcggtctaccacttcaacctgcccaagagcctggagaacttcgcccaggagatc
ggccgcgccgggcgtgatggggaacccgctcgctgtgaattgtttgcgtgcgctgaggat
gttctgacgcttggcaacttcacgtacggcgacacgccgacgccggaggcgatcgccgac
ctgctcaaggagattctcgggctgggtccgacattcgacatctcggcgtacgacctctcg
cagcggcacgatatccggcaactcgtcgtgcagacgctgatgacgtatctcgagctcgaa
gggatcctggaagcgaccggcccgttttactcggactgcaagttccgtccgttgcgatca
tcgggcgaaatcctcgcgcagtacgacgcgcctcgtgccgccttcctgcgtcaggttttc
cgccaagcccgaccagggaagatctggttcgcgctcgacgtgtccgaggtggcccgaaac
ctcgaagagacccgcgagcggatcagcgcggccttgaaccatcttgaagagaaaggggac
gtcgaactccaacttgccggtctccgccaaggctatcggcgaaccacgggcgatcccgac
ctggacgaactccgcgagcggctggtggcccgattcctcgatcgcgaacgacgtgacatt
gcccgcgtccattcggtgctcgagtacgcccaggccgaaggatgtctcaccggccggctc
ctggcctatttcggcgaaaccctcgtgggcgattgcggccactgcgcgcgttgtctgggg
gaacctccgatcccgctgccgcctgtgcctgagcgtgcgctcggttccttggagcaggag
atggtggaacgggtacggtccgaacggcacaaggcgctgacgtcgtctcgccagctcacc
cgcttcctctgtggtctcgtctcccctgcgtccagccgaagcaagctcgccaagcatccc
cagttcgccgcactggccgatgttccgtttcctcgcgtgcttgacttcgtgaagtccgta
tataattga
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