Singulisphaera acidiphila: Sinac_5138
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Entry
Sinac_5138 CDS
T02393
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
saci
Singulisphaera acidiphila
Brite
KEGG Orthology (KO) [BR:
saci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
saci03016
]
Sinac_5138
Enzymes [BR:
saci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Sinac_5138
Transfer RNA biogenesis [BR:
saci03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Sinac_5138
Prokaryotic type
tRNA splicing ligases
Sinac_5138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGA29290
UniProt:
L0DKC5
LinkDB
All DBs
Position
complement(6430419..6431888)
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AA seq
489 aa
AA seq
DB search
MAKNSGYTGPLEQVGTCQWRIPKTYRDDMRVDGLIFADESLIAQIKKDQGPEQVVNVATL
PGIQKASLAMPDIHWGYGFAIGGVAATDPEEGGVISPGGVGYDINCGVRLLRTDLAWDEV
KPRIRQLVDELFREIPTGVGQRGRFLFDKPKLSRLMEQGSAYVVEQGWGTVRDLGFTEAG
GRLDGADPDRVSDRAFTRGYDQCGTLGSGNHFLEVQVVDRIHDQEAADVMGLREGQVTVL
IHSGSRGLGYQVCDDYLGVFKGAPKRYGFSLPDPQLACAPVRSPEGQSYLGAMRAAANYA
WCNRQLLTHQAREVFARVLGTPWESLGMDLVYDVAHNIAKFEHHQVGGGISKQVCVHRKG
ATRAFPPGHPEIPDEYHKIGQPVIIPGSMGTASWVLAGLPGSMEQTFGTTCHGAGRMMSR
TAAIKLAGDRRIDKELDAIGIIARARGHKGLAEEQPAAYKDVDQVVEVVDKAGISKKVAR
LRPVGVIKG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaatagtggatatacgggtccgttggagcaggtgggaacttgccaatggcgg
attcccaagacttatcgagacgatatgcgcgtcgacggcctgatcttcgccgacgagtcg
ctgatcgcccagattaagaaagaccaaggccctgagcaagttgtgaacgtagcgaccctg
ccgggtattcagaaggccagcctggcgatgcccgacattcactgggggtacggcttcgcc
atcggcggcgtggccgcgaccgacccggaggaagggggggtgatctcgccgggcggggtt
ggctatgacatcaactgcggcgtccgactgctccgtacggaccttgcctgggacgaggtt
aaaccgcgaattcgccagctcgtcgacgagcttttccgggaaattcccacaggcgtcggc
cagcgaggccggttcctcttcgataagccgaagctcagccggttgatggagcaaggctca
gcctacgtcgtcgaacaaggttggggaaccgtgcgcgacctcgggttcaccgaggcgggg
ggccggctcgatggggccgatcccgatcgggtcagcgaccgggcgttcacgcggggctat
gaccagtgcggaacgcttgggtcggggaaccacttcctcgaggtgcaggtcgtggaccgg
atccatgaccaggaagcggccgacgtcatgggcttgcgcgaggggcaggtcaccgtcctg
atccactccgggtcgcgcgggctcggctatcaggtctgcgacgactacctcggggtcttc
aaaggagcccccaaacggtacggattctcgctgcccgacccgcagctcgcctgcgctccg
gtccgcagtcccgaaggccagtcgtatctgggcgcgatgcgcgcggcggcgaactacgcc
tggtgcaaccggcagttgctcacgcaccaggcgcgtgaggtcttcgcgcgggtcctcggg
accccttgggaatcgctcggcatggacctcgtctatgacgtggcccataacatcgcgaag
ttcgagcaccaccaggtcggcggaggcatctcgaagcaagtctgcgtccatcgcaaaggg
gcaacccgcgcgttcccccctggccatccggaaatccccgacgagtaccacaagatcggc
cagccggtgatcattccgggcagcatgggaactgcgagctgggtcctcgccggcctgccg
ggaagtatggagcaaaccttcggcacaacctgccacggcgccgggcgaatgatgagccgg
acggccgccattaaactcgcgggcgatcggagaattgataaggaactcgacgcgatcggc
atcatcgcccgcgcccggggccataagggattggctgaggagcagccggccgcctacaaa
gacgtcgaccaggtcgtcgaagtcgtcgacaaggcgggcatttccaagaaagtggcccgg
ctccgccccgtcggcgtcatcaaagggtaa
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