Sulfolobus acidocaldarius N8: SacN8_00825
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Entry
SacN8_00825 CDS
T02452
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
sacn
Sulfolobus acidocaldarius N8
Pathway
sacn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SacN8_00825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacn03019
]
SacN8_00825
Messenger RNA biogenesis [BR:
sacn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SacN8_00825
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SacN8_00825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Zn_ribbon_3
A2L_zn_ribbon
HVO_2753_ZBP
Zn_ribbon_NUD
ECR1_N_2
DZR
Auto_anti-p27
S1
Trm112p
Zn_ribbon_8
HypA
CTU2
Cas12f1-like_TNB
Zn_Ribbon_TF
Zn_ribbon_NOB1
TYW3
Prok-RING_1
C1_1
Zn_ribbon_LysW
Zn_Ribbon_YjdM
Zn_ribbon_PaaD
DUF7573
Motif
Other DBs
NCBI-ProteinID:
AGE70146
UniProt:
M1ISE9
LinkDB
All DBs
Position
complement(139725..140291)
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AA seq
188 aa
AA seq
DB search
MKNQGELLLPGEELSVIEEFTTGEGTYEFNGTVYSSVVGKAFYDMINRKVNSIGFKKPGI
LSLKKSKYVLGIVVGIKEDSAIINIQSLEDKSLVTTLSGYIHISQISSKYLNTISDAMRV
GDIIRAKPINYIIPVPLTIKQRDLGVISAKCSICGSPLQRQDEEHLKCPDCGNIETRKLA
FTVKKGGN
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaatcaaggagaattgcttttgccaggagaggaactgagtgtaattgaggagttc
acaaccggtgaaggaacttatgagtttaatggtaccgtttactcaagcgttgtaggtaaa
gctttctatgatatgataaacaggaaagttaactccattggattcaaaaaaccgggtatt
ctatcactaaagaagagtaaatatgttcttggaatagtggtaggaattaaagaggattca
gctataattaacattcagagtttagaggataagtcattagtaactaccctgagcggttac
atacacatctcacaaatatctagcaagtatctgaacactatttcagatgccatgagagtt
ggtgatatcataagagctaaaccaataaactacattattccggttcctttaacgatcaaa
cagagagacttgggagtgatctctgctaagtgctcaatctgtggaagtcccttacagagg
caagacgaagaacatttaaaatgcccagactgtggaaatattgagacaagaaaactggca
tttacggtgaagaaaggtggaaattaa
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