Streptococcus acidominimus: SAME_00010
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Entry
SAME_00010 CDS
T08039
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saco
Streptococcus acidominimus
Pathway
saco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAME_00010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saco03400
]
SAME_00010 (mfd)
Enzymes [BR:
saco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAME_00010 (mfd)
DNA repair and recombination proteins [BR:
saco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAME_00010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
AAA_22
DUF6845
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SNV31486
UniProt:
A0A239WBN7
LinkDB
All DBs
Position
1:6689..10198
Genome browser
AA seq
1169 aa
AA seq
DB search
MAKLGLTDLLVKNKTIQNWLGHIATGRQLVMGLSASSKALAIATAFQYHQGKMVIVTSTQ
NEAEQLISDLSALLDEKYIYSFFADDVAAAEFIFSSLDRTLSRLESLNFLQDKTKTGILV
TSIIGTKILLPNPISYQKAQIKLSIGVDKELDNIVKQLSHLGYERVNQVLSPGEYSRRGD
ILDIFEVTEEYPFRIEFFGDEIDGIRTFDSESQKSLDNLEEITISPATDIILNPDDFQRA
TIKLEEAIEKSLSDDLIAYLTDLLSVTKDGYRHKDIRRILSFFYKKSYSLFDYFTKDTIL
FIDDFQKLMDRHARFEMEVANLLTEDLQASKAVSSQVYFADNYQILRQYQPATFFSNFHK
GLGNLKFDALHNMTQYPMQEFFNQFPLLVDEIHRYQKQRATILVQVDSQKSLESLQETFK
EYALELLISDAQEIIPYQAQFIIGQLSSGFYLADEKLVLITEREIFHKKIKRRARRSNIS
NAERLKDYNELEKGDYVVHQVHGIGKFLGIETLEIKGVHRDYLTIQYQNSDRISLPIEQI
ESLSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFAFSPD
DDNQREFDNDFAYVETEDQLRSIAEIKKDMEADKPMDRLLVGDVGFGKTEVAMRAAFKAV
NDGKQVAILVPTTVLAHQHYVNFKERFNNQAVNIEELSRFKSKKEQNLILEELSKGRVDI
IIGTHRLLSKDVNFSDLGLIVIDEEQRFGVKHKETLKALKTKVDVLTLTATPIPRTLHMS
MLGIRNLSVIETPPTNRYPVQTYVMETNLGMVREAILRELDRGGQVFYVYNKVDTIEQKA
SELQELIPEASIGIVHGQMSEIQLENTLLDFIAGVYDVLVATTIIETGVDISNVNTLFIE
NADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLDAIKGFTELGSGFKIA
MRDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEDAILKKQGKSQVRQKGNAELNLQIDA
YLPTQYISDERQKIEIYKRIREIDSRAAYEELQDELIDRFGEYPDQVAYLLEIGLVKAYL
DSVFTELVDRKENQVIIRFEKVTQTLFLTQDYFEALSKTNLKARISEHQGKIEVIFDIRN
KKDYEILEELIQFGQGFVEIKERKMKNKD
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggctaaattagggttaacagatttactagtaaaaaataaaaccattcaaaattggctt
gggcatattgctacaggacgtcaattggtcatgggcttgtctgcttctagtaaggccttg
gccattgcaactgcttttcaatatcatcaagggaaaatggttattgtaacctctacccag
aatgaagcagaacagctaatcagtgatttatcagcactattagatgaaaagtatatctat
agtttttttgctgatgatgtcgccgctgcagagtttattttttcatcgcttgatcgtacc
ctgtctcgcttagaaagtttaaattttctacaggataagacaaaaactggtattttggta
acttctattattggtactaaaatactattaccaaatcctataagctatcaaaaggctcaa
attaaactgtcaataggagttgacaaagaacttgacaatattgtcaagcaactatcacac
ttaggatatgaacgtgttaaccaagtattgagtcctggagagtacagccgtaggggagat
attcttgatatctttgaggtgacagaagagtatccatttaggatagagttttttggtgat
gagattgatggtattcgtaccttcgatagtgagagtcagaaatccctggataacttagag
gaaattaccatttcaccagcgacagatattatcttaaacccagatgatttccaacgagct
actatcaaactagaagaagccattgaaaagagtctcagtgatgacttaatagcctatctg
accgaccttttatcagtcactaaagatggttatcgtcataaggatatccgacgcattctt
agttttttctataagaaaagctacagtttatttgattactttaccaaggatacgattctg
tttatcgatgactttcaaaagctgatggatcgtcatgcacgttttgaaatggaagtagcc
aatcttctgacagaagatttacaagccagtaaagctgtgtcaagtcaagtttattttgct
gataattaccaaatcttacgtcaatatcaaccagcaaccttcttttctaattttcataaa
ggtttaggaaatcttaaatttgatgccctgcataacatgactcaatacccaatgcaggaa
tttttcaaccaatttccactcttggtagacgagattcatcgttatcagaaacaaagagcg
accattctagtgcaggtggactctcagaaatccttagaaagtttacaagagacctttaag
gagtatgccttagagttattaatttctgatgctcaagagattattccttatcaagctcaa
tttattattgggcagttatcaagcggattttatttagctgatgaaaagttagttttgatc
actgaacgtgagattttccataaaaaaataaaacgtcgagcccgtcgctctaatatctct
aatgcggaacgtctcaaagactataacgagcttgaaaaaggtgactacgttgttcatcaa
gtacatggtattggtaaatttcttgggattgaaactttagaaatcaaaggtgttcatcgt
gattacctaaccattcaataccaaaattcagatcgtatttcattaccgattgaacaaatt
gaaagtttatccaaatacgtttcagctgatggtaaagagccaaaaattaataagcttaat
gatggtcgcttccaaaaaacaaaacaaaaagtcagcaaacaagttgaagacattgctgac
gatttgttaaaactgtatgctgaacgtagtcaactcaaaggcttcgctttttcgcctgat
gatgacaatcaacgtgaattcgacaatgattttgcctatgttgagacagaagaccaactc
agatccattgctgaaatcaaaaaagacatggaagctgacaagcctatggatcgtctttta
gttggtgatgttggttttggtaagacagaggttgctatgcgggcggcctttaaagcagtc
aatgatggcaagcaagtagctattttagtaccaacgacagtcttagcacatcaacattat
gtcaactttaaagaacgttttaacaaccaagctgtcaacattgaggaactcagtcgtttt
aaaagtaagaaagagcagaaccttattttagaagaattatccaaagggcgagttgatatt
attatcggaacgcatcgtcttctttctaaagatgtcaatttctcggatttgggtttgatt
gtcattgatgaagagcaacgatttggtgtcaagcacaaagaaacattgaaagcattgaaa
actaaggttgatgttttgaccttgacagcaacaccaattcctcgaacacttcatatgtca
atgcttggtattcgaaacttatcagtcattgaaacacctccaactaatcgttaccctgtt
caaacctatgtgatggaaactaatcttggaatggttagagaagctattttacgagaatta
gaccgtggtggacaggttttctacgtttacaataaagttgataccattgaacaaaaggcc
tctgaattacaggagttaatccccgaagcaagcattggtattgttcatggtcagatgagt
gaaattcaactagaaaatacccttttagactttatcgcaggggtttacgatgtcttggta
gcaacaactattattgaaacaggtgttgatatttctaatgtcaatactctatttatcgaa
aatgcagaccatatgggcttgtcaaccttgtatcaacttcgtgggcgtgtagggcgctcc
aatcgtatcgcttatgcctaccttatgtatcgccctgataaagtgttgacagaagtttca
gagaaaagattagacgccattaaaggctttacagaactgggatctggctttaagattgcc
atgagggatttgtccattcgaggtgctggtaatatcctaggtgcctcacaaagtggtttc
attgattcagttggatttgaaatgtattcccaacttttagaggatgctattttaaagaaa
caagggaaatcacaggtccgtcagaaaggcaatgctgagcttaatttacaaattgatgct
tatctgccaacacaatacatttcagatgaacgtcagaaaattgaaatctacaaacgcatc
cgtgaaattgattcacgcgctgcctacgaagaacttcaggatgagttgattgatcgcttt
ggcgaataccctgatcaagtcgcctatctacttgaaatcggtcttgtcaaagcctacctt
gacagtgtctttacagaattagttgaccgtaaggagaatcaagtgattattcgctttgaa
aaagtcacgcagactctctttttgactcaagattactttgaagccctatcaaaaaccaat
ctcaaggctcgtatcagtgagcatcagggtaaaattgaggtaatctttgatatccgaaat
aaaaaagattacgagattctagaagaactgattcagtttgggcaaggatttgttgaaatc
aaggaacgtaaaatgaaaaataaggattaa
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integrated database retrieval system
