Sulfolobus acidocaldarius Ron12/I: SacRon12I_02960
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Entry
SacRon12I_02960 CDS
T02453
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
sacr
Sulfolobus acidocaldarius Ron12/I
Pathway
sacr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SacRon12I_02960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacr03019
]
SacRon12I_02960
Messenger RNA biogenesis [BR:
sacr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SacRon12I_02960
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SacRon12I_02960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
KH_1
RRP40_S1
S1
KH_2
Motif
Other DBs
NCBI-ProteinID:
AGE72845
UniProt:
M1JAR2
LinkDB
All DBs
Position
complement(488577..489326)
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AA seq
249 aa
AA seq
DB search
MSQANKIYFEDRSIVTPGDLIAEGEFQVPWSPYYYKVNGKYYSAITGLITVKDGSIFEVI
PLESSRYYPKVGDTIIGLVEDIEIYGWVIDIKSFYSAYLPASSLLGRPISPGEDVRRYLD
VGDYVIAKIEAFDRTISPVLTVKGKGLGRIPLGTVMDIMPVKVPRVIGKNRSMIEVLTSE
SGCEIFVAQNGRIHIKCANNLIEEALIEAINIIQSESHTKGLTERIRNFLKQKLGVIRND
SAPKTEANT
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaggcaaataaaatatattttgaagatcgtagcatagtgaccccaggagatctg
atagctgaaggagaatttcaagtaccatggtcgccatattactataaagttaatggtaag
tactattctgctattactggactcataacagtaaaggatggaagtatatttgaggtaata
cctctagaatcatcaagatattatccaaaagttggagatacaataataggcttagttgaa
gatatagaaatatacgggtgggtaattgatattaaatctttttatagcgcttatttacct
gcttcatctttactaggaagaccaatttctcctggggaagatgtgagaagatatttggat
gtaggagattacgtgatagccaagatagaagcttttgatagaacaataagcccagttttg
acagttaagggtaaaggtctgggtagaatacctttaggaactgtgatggatattatgccg
gtaaaagttcccagagttattggtaaaaacagaagtatgatagaagtactgacaagtgaa
agtggctgtgaaatattcgttgcacagaacggtaggatacatattaaatgcgcaaataat
ttaatagaggaagctttaatagaagcaattaatatcatacaaagtgagtctcacactaaa
ggtctaacagaaagaattagaaactttttgaaacaaaaattaggcgtgatcagaaatgat
tcagctccaaaaaccgaagctaatacttga
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