KEGG   Sulfolobus acidocaldarius SUSAZ: SUSAZ_00875
Entry
SUSAZ_00875       CDS       T02975                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
sacs  Sulfolobus acidocaldarius SUSAZ
Pathway
sacs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sacs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SUSAZ_00875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sacs03019]
    SUSAZ_00875
Messenger RNA biogenesis [BR:sacs03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SUSAZ_00875
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     SUSAZ_00875
SSDB
Motif
Pfam: ECR1_N Zn_ribbon_3 A2L_zn_ribbon HVO_2753_ZBP Zn_ribbon_NUD ECR1_N_2 DZR Auto_anti-p27 S1 Trm112p Zn_ribbon_8 HypA CTU2 Cas12f1-like_TNB Zn_Ribbon_TF Zn_ribbon_NOB1 TYW3 Prok-RING_1 C1_1 Zn_ribbon_LysW Zn_Ribbon_YjdM Zn_ribbon_PaaD DUF7573
Other DBs
NCBI-ProteinID: AHC50683
LinkDB
Position
complement(145001..145567)
AA seq 188 aa
MKNQGELLLPGEELSVIEEFTTGEGTYEFNGTVYSSVVGKAFYDMINRKVNSIGFKKPGI
LSLKKSKYVLGIVVGIKEDSAIINIQSLEDKSLVTTLSGYIHISQISSKYLNTISDAMRV
GDIIRAKPINYIIPVPLTIKQRDLGVISAKCSICGSPLQRQDEEHLKCPDCGNIETRKLA
FTVKKGGN
NT seq 567 nt   +upstreamnt  +downstreamnt
ttgaagaatcaaggagaattgcttttgccaggagaggaattgagtgtaattgaggaattc
acaacaggtgagggaacttacgaatttaatggtaccgtttactcaagcgttgtaggtaaa
gctttctatgatatgataaacaggaaagttaactccattggattcaagaaaccgggtatt
ctatcattaaagaaaagtaaatatgttcttggaatagtggtaggaattaaagaggattca
gctataattaacattcagagtttagaggataagtcattagtaactactctaagcggttac
atacacatctcacaaatatcaagcaagtatcttaacactatttcagatgctatgagagtt
ggtgatatcataagagctaaaccaataaactacattattccagttcctttaacgatcaaa
cagagagacttaggagtgatctctgctaagtgctccatctgtggaagtcccttacaaagg
caagacgaagaacatttaaaatgcccagactgtggaaatattgagacaagaaaactagca
tttacggtgaagaaaggtggaaattaa

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