Sulfolobus acidocaldarius SUSAZ: SUSAZ_06290
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Entry
SUSAZ_06290 CDS
T02975
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sacs
Sulfolobus acidocaldarius SUSAZ
Brite
KEGG Orthology (KO) [BR:
sacs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sacs03016
]
SUSAZ_06290
Enzymes [BR:
sacs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SUSAZ_06290
Transfer RNA biogenesis [BR:
sacs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SUSAZ_06290
Prokaryotic type
tRNA splicing ligases
SUSAZ_06290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AHC51585
LinkDB
All DBs
Position
complement(1088491..1089939)
Genome browser
AA seq
482 aa
AA seq
DB search
MQTQIKRIGNYEWRIEKGAQECMKVPVTVFADDVLIDKMKQDLTLRQATNVACLQGVQEA
VYVLPDGHQGYGFPIGGIAASAIDEEGVVSPGGIGYDINCGVRLLRTNLDYKDVKDKLKD
LVEEIYRNVPSGVGSEGRVKLSYQQLDNVLSEGVKWAVDNGYGWNRDMGHIEQSGSWNLA
DPSKVSPIAKQRGHTQLGTLGAGNHFLEIQVVDKIYDEKVAKAIGITHEGQVTVMVHTGS
RGLGHQVASDYLQVMERAMKKYNIKVPDRELAAIPFNTREAQDYIHAMSSAANFAWTNRQ
MITHWARESFGRVYRMDPEKLDLNIVYDVAHNIAKIEEYDIDGKRKKVLVHRKGATRAFP
PGSTEIPADHRNVGQIVLIPGSMGTASYIMAGIPEGRRTWFTAPHGAGRWMSREAAVRSY
PVNSVVQNLEEKGIIVRAATKRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVARLKPIGVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagactcagattaagagaattggcaattatgagtggcgtattgaaaagggagcccag
gaatgtatgaaagtgccagttacagttttcgcggatgatgtgcttatcgataaaatgaaa
caggacttaacattaaggcaagctactaatgtagcctgcttacagggagtgcaagaggca
gtatatgtactccctgatggtcatcaggggtatggttttccaataggaggaatagcagct
agtgcaattgacgaagaaggtgtagtgagcccaggaggaataggatatgatataaactgt
ggtgtaagactactgagaactaatctggattataaggatgttaaagataagcttaaggat
ttagtcgaggaaatatacagaaacgtaccaagtggagtgggaagtgaaggaagagtaaaa
ttatcgtatcaacaacttgacaatgtattaagcgagggggtaaaatgggctgttgataat
ggatatggatggaatagagacatggggcatatagagcagagtggcagttggaatttagca
gatccatctaaggtaagtcctatagcaaaacagaggggtcatacacaattaggtacatta
ggagcgggtaatcatttccttgaaattcaggttgttgataagatatatgatgaaaaggta
gctaaagctataggcataacccatgaaggacaggtaacagtaatggttcatacgggctcc
agaggattaggtcatcaagtagccagtgattatttacaagttatggaaagagcaatgaag
aaatacaacataaaggttcctgatagggaacttgcggctataccatttaacactagagag
gctcaagattatatacacgcaatgtcgtctgcagcaaacttcgcatggactaataggcaa
atgataacacattgggctagagaaagttttggtagagtgtatagaatggatcctgaaaaa
ttagatcttaatatagtatatgatgtagcccataatatagcaaaaatagaggaatacgat
atagatggtaagagaaagaaagttttagtacacagaaagggagcgacgagagcttttcca
ccaggaagtactgagattcctgcagatcataggaacgtaggtcaaatagtcctcatacca
ggaagcatggggacagcaagttatataatggcaggaattccggagggtagaagaacatgg
tttactgcaccacatggtgcaggaagatggatgtcgagagaagctgcggtcagaagttat
ccagttaattcagtagttcaaaacctagaggagaagggtattattgtgagggcggctact
aaaagagtggtagcggaggaggcaccaggtgcatataaagatgttgatagagtagcgaaa
gttgctcatgaagttaagatagctaaattggttgcaagattaaaacccataggtgtgact
aagggttga
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