Streptomyces actuosus: DMT42_13460
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Entry
DMT42_13460 CDS
T08084
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sact
Streptomyces actuosus
Pathway
sact03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sact00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMT42_13460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sact03019
]
DMT42_13460
03009 Ribosome biogenesis [BR:
sact03009
]
DMT42_13460
Enzymes [BR:
sact01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DMT42_13460
Messenger RNA biogenesis [BR:
sact03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DMT42_13460
Ribosome biogenesis [BR:
sact03009
]
Prokaryotic type
rRNA processing factors
DMT42_13460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWT43226
UniProt:
A0A2U9P0X0
LinkDB
All DBs
Position
complement(2839265..2843512)
Genome browser
AA seq
1415 aa
AA seq
DB search
MLEPTEPTESSTGSELNTPSDTLPPRRRRRAASRPAGPPAVSTSDAPVETVEPAIPAAAA
DEIAEAVETEEEAQAAEAAPAAAEAAPAGRPRRRATRRASSPAGSPAGAEPAETVVPAAA
PAAPAEEQAAEDNAVTEEPAPRRTRRRATRRVTSPTEAPAAEVVEPAGSSAGTPAAEPAA
QPAAEVADTAALPAEAAPAEEAPARRTRRRATRRVSASAGAPTGAEEAAETAETAETVEA
TETPAAETEPEIVTPAAAEATPAAEPEAAEAEAGPRRRRRVVRRAAAAAGAPATAEQAET
TEAAEASRAVEATATPVTAETPVSAGVETETAAVTGVGAPAEQAPAAEEGGPRRRRRVSR
KAATGFAEPARPAAEEADAPRKPARPAVAVFQAPVFTEPKFQTPERAAAEAAAEAEASGP
EELPEEQAGGRRRRRRRGAGFGEEPETAAAQQTTAAPEAPEAAEPVESEEAEEATGLAEG
EDAEDGEETGSRRRRRRGGRRRRRGEAADSEGGDTDAEELAAEQAEQDAEDTAEQVEEDA
EDGAEDSAHDSDEGRDDRDEQGAGGSASSRRRRRRRRRAGDGAAEAEPSADDPERTVVKV
REPRPKSEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMV
VRQHGDRTQIGVLEDGVLVEHYVNKEQAVSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNA
VLYAGEVNFEALGMGNGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVY
VPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQW
EEIQKKAKNGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWQTIHGYVSHVAPD
LADRLQRWTSDVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTG
QGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRD
RTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMDQPSAQGGGGKRKK
RARAGAGEHEHEAAAAVEPAETAEQEAETEAEVVAEVAEPVALPAPDFAPDEELYSSVAE
AEAAAGRRGRRRASRRASAPAGAPRAEAPTAQRVTAREEAERPVRRESAEEALAEPAAVE
DAVVAAPEAPAAEAPAAEEAAPKGRTRRRATRKVTAPAGSPAGAEAAVVTVAETAPVAEA
PAEAASAEQAEPEAQAVAEPAAPARPRRRAVRKATAPTAPEEAAVVVLPAEPKAEAQEVS
VAEQAAEEAEQALVEAKEAAAEEAAGAEGAEAPAKKTAARKTAKKATAKKAATKKTAAKK
TVAKKATAKKAAKTAKTATAKKTAKKTVPASADES
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagccgaccgaacccacagagtcctccacgggctccgaactcaacacccccagc
gacacgctgccgccgcgccggcggcgtcgtgccgcttcccgcccggccggtcctccggcc
gtgagcacctccgacgcccccgtcgagacggtcgagccggccataccggccgctgccgcc
gacgagatcgcggaagccgtcgagacggaggaggaggcacaggcggccgaggccgcaccg
gccgccgccgaggccgcgcccgccggccggccgcgccgccgggccacccgccgcgcctcc
tcgcctgccggatccccggcgggcgccgagcccgcggagaccgtcgtaccggccgccgcc
cccgccgccccggcggaggagcaggccgccgaggacaacgcggtcacggaggagcccgct
ccgcgccgcacccgccgccgcgccacgcgccgcgtcacctcgcccaccgaggcgcccgcc
gccgaggtcgtcgagcccgccgggagcagcgccggcacgccggccgccgagcccgccgcg
cagcccgccgccgaggtcgccgacaccgccgcgctgcccgccgaggccgctccggccgag
gaggcccccgctcgccgtacccgccgccgggccacgcgccgcgtgtccgcgtcggccggg
gcgcccaccggggccgaagaggccgcggagaccgcggagaccgcggagaccgtggaagcc
acggagacccccgcggccgagaccgagcccgagatcgtgacgccggccgccgccgaggcg
acccccgccgccgagccggaggccgccgaggccgaggccggcccccgccgtcgccgccgc
gtcgtgcgccgggccgccgctgccgccggggcgcccgccaccgccgagcaggccgagacc
accgaagccgccgaggcctcgcgtgccgtcgaggccaccgccaccccggtgaccgccgag
acgcccgtctccgccggcgtcgagaccgagaccgccgccgtcaccggcgtcggcgccccc
gccgagcaggcccccgccgccgaggagggcggcccgcgccgccgtcgccgggtctcccgc
aaggccgcgaccggcttcgccgagcccgcgcggccggccgccgaggaggccgacgcgccg
cgcaagcccgcgcgtcccgccgtcgccgtgttccaggcgccggtgttcaccgagccgaag
ttccagacgccggagcgtgccgccgcggaggccgcggccgaggccgaggcctccgggccc
gaggagctgccggaggagcaggccggcggccgccggcgccgtcgccgccggggcgccggg
ttcggcgaggagcccgagaccgccgccgcccagcagaccaccgcagcccccgaggccccc
gaggcggccgagcccgtcgagagcgaggaggccgaggaggccaccggtctcgccgagggc
gaggacgccgaggacggcgaggagaccggctcgcgccgtcgccgccgccggggcggccgt
cgccgtcgccgcggcgaggccgccgacagcgagggcggggacaccgacgccgaggagctc
gccgccgagcaggccgagcaggacgccgaggacaccgccgagcaggtcgaggaagacgcc
gaggacggcgcggaggactccgcccacgactccgacgagggccgtgacgaccgtgacgag
cagggcgccggcggctccgccagcagccgccgccgtcgtcggcgccgtcgccgcgccggg
gacggcgcggccgaggccgagccgtccgccgacgaccccgagcgcacggtcgtcaaggtc
cgcgagccgcgcccgaagagcgagccgtccgacgaggtgcagtccatcaagggctccacg
cgtctggaggcgaagaagcagcgccgccgcgagggccgcgagcagggccgccgccgcgtg
ccgatcatcaccgaggccgagttcctggcccgccgcgaggccgtcgagcgcgtgatggtg
gtccgccagcacggcgaccgcacgcagatcggcgtcctggaggacggggtgctcgtcgag
cactacgtcaacaaggagcaggccgtctcgtacgtcggcaacgtgtacctgggcaaggtg
cagaacgtgctgccgtcgatggaggccgccttcatcgacatcggcaagggccgcaacgcc
gtcctgtacgccggcgaggtcaacttcgaggccctcggcatgggcaacggcccgcgccgc
atcgagtccgccctgaagtccggccagtccgtgctcgtccaggtcaccaaggacccgatc
gggcacaagggcgcgcgtctgaccagccaggtctccctcccgggccgctacctcgtgtac
gtccccgagggctccatgaccggcatcagccgcaagctgcccgacaccgagcgggcccgg
ctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgcc
gccgagggcgcgagcgaggacgagctgcgccgggacgtcgagcgtctgcaggggcagtgg
gaggagatccagaagaaggcgaagaacggcagcaacgcgccgacgctgctgtacggcgag
ccggacatgaccgtccgtgtcgtccgcgacatcttcaacgaggacttctccaaggtcatc
gtcagcggtgacgacgcctggcagacgatccacggctacgtctcccacgtggcgcccgac
ctcgccgaccgcctgcagcggtggacgagcgacgtcgacgtcttcgccacgtaccggatc
gacgagcagctcgccaaggcgctggaccgcaaggtctggctgcccagcggcggttcgctg
gtgatcgaccggaccgaggcgatggtcgtcatcgacgtcaacaccggcaagttcaccggc
cagggcggcaacctcgaggagaccgtcaccaggaacaacctggaggcggccgaggagatc
gtccgccagctgcggctgcgcgacctcggcggcatcatcgtcatcgacttcatcgacatg
gtcctggagtccaaccgcgatctggtgctgcggcgcctgctggagtgcctgggccgcgac
cgtacgaagcaccaggtggccgaggtgacctcgctgggcctcgtgcagatgacccgcaag
cgggtcggccagggcctgctggagtcgttctcggagacctgcgtccactgcaacggccgc
ggtgtcatcgtccacatggaccagcccagcgcccagggcggtggcggcaagcgcaagaag
cgcgcccgtgccggtgccggtgagcacgagcacgaggccgccgcggccgtggagccggcc
gagaccgccgagcaggaggcggagaccgaggccgaggtcgtcgcggaggtggccgagccg
gtcgccctgcccgcgcccgacttcgccccggacgaggagctgtacagcagcgtcgccgag
gcggaggcggccgccggccgccgtggccgtcgccgggcgagccgccgggcctccgcgccc
gccggtgccccgcgggccgaggcgccgaccgcgcagcgggtgaccgcacgggaggaggcc
gagcgtccggtgcggcgggagagcgccgaggaggcgctggccgagccggccgccgtcgag
gacgccgtggtcgccgcacccgaggctccggccgccgaggcccccgccgccgaggaagcc
gcgccgaagggccgtacccgccgtcgcgccacccgcaaggtgaccgcgccggccggttcg
cccgccggggcggaggcggccgtggtgaccgtcgcggagacggctcccgtggccgaggct
cccgccgaggcggcttctgcggagcaggccgaacccgaggcccaggccgtcgccgagccc
gccgctccggcccgtccgcggcgccgcgcggtccgcaaggccaccgcgccgaccgcgccg
gaggaggccgccgtcgtggtcctcccggccgagccgaaggccgaggcccaggaggtctcg
gtcgcggagcaggccgccgaggaggccgagcaggccctcgtggaggccaaggaggccgcc
gccgaggaggctgccggggccgagggcgccgaggctccggccaagaagacggccgcccgc
aagacggccaagaaggccacggcgaagaaggccgccaccaagaagacggcggccaagaag
accgtggcgaagaaggcgacggctaagaaggcggcgaagaccgccaagacggccacggcc
aagaagacggcgaagaagaccgtcccggcctccgccgacgagagctga
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