Sporomusa acidovorans: SPACI_026970
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Entry
SPACI_026970 CDS
T10566
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sacv Sporomusa acidovorans
Pathway
sacv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPACI_026970 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacv03019
]
SPACI_026970 (cshA_1)
03009 Ribosome biogenesis [BR:
sacv03009
]
SPACI_026970 (cshA_1)
Enzymes [BR:
sacv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPACI_026970 (cshA_1)
Messenger RNA biogenesis [BR:
sacv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPACI_026970 (cshA_1)
Ribosome biogenesis [BR:
sacv03009
]
Prokaryotic type
rRNA helicases
SPACI_026970 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_19
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XFO72644
UniProt:
A0ABZ3J3M2
LinkDB
All DBs
Position
2825149..2826723
Genome browser
AA seq
524 aa
AA seq
DB search
MKDIVTLFGNISLSKKIAAAITEMGFEEPSPIQSQTIPLVLAGKDVLGQAQTGTGKTAAF
GIPIMERITDVRQIQALVLTPTRELAIQVSEELAKIGKFKRIKTLPIYGGQAIERQIRTL
KSGVQVVIGTPGRLLDHIRRNTIKLDHVKVLVLDEADEMLDMGFIDDLESILQHVPTERQ
TLLFSATMPSEIMTLANKYMKDRVTVTISKEQLTVPLIDQIYYETRDKLDGLCRVLDSET
IGRAIIFCRTKKGVDELVASLSARGYLSDGLHGDLSQAQRDRVMKKFRDGKLDILIATDV
AARGLDIEHITHVINYDIPQDPESYVHRIGRTGRAGKKGVAITFIQPREYRQLKIIEREI
KTRILRRQLPSPADILERQTEVIKNQLTQTIARGGFDAYSGIIADLAADYDPIDLAAAAL
KLFQEGYKEQVLIEKKQFGNTGAEPGMVRLFINAGRAQKIQPQDIVRTIAEEADIEGSII
GVINIYDRFTFVEVPETVAERVLSVMNKNTIKGYRINIEPAKGR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatattgtaactttatttggtaatatttcattaagtaaaaaaattgcggcggca
ataactgaaatgggatttgaagaaccgtctcccatccaaagccagacaattccactggtg
ttggcaggtaaagatgttttagggcaggcccagacaggaacaggtaaaaccgctgctttt
ggcataccgattatggaacggataaccgatgttaggcaaattcaggcgttggttctaacg
cctacgagagaactggccattcaagtttcagaggaattagctaaaattggcaaatttaaa
cggattaaaacattgccaatttatggcggtcaagcgatagaacggcagattagaacactc
aagtcgggagttcaggtggtaatcggcactccgggacgattactggatcatattcgcaga
aataccattaaactggatcatgtaaaagtactggtactcgatgaagcggacgaaatgctg
gatatgggctttattgacgacctggaaagcattcttcagcatgttcctaccgagcgtcaa
actttactattctcagctaccatgccttcggaaataatgactttagctaataagtatatg
aaagacagagtaacggtaacgattagcaaagagcaattaaccgtgccgctcattgaccaa
atttactatgaaacccgtgacaagttggacggtttatgccgggtacttgactctgaaaca
attggacgagccattattttttgccgcaccaaaaaaggagttgacgaattagttgcctca
ttgtcagcacgggggtatctctcagatgggttacacggcgatttgagccaggcccagcgt
gaccgggttatgaagaaatttagggatgggaaattagatatcctaattgccactgacgtc
gcggcgcgaggactggatatagaacatattacccatgttattaactatgacattcctcaa
gatcctgagtcatatgtccatcgtataggccgtaccggccgggcgggaaaaaaaggcgtg
gctattacatttattcagccgcgtgaatatcgacaattaaaaattattgaaagagaaata
aaaacgcgtattttaagacgacaattgccttctcccgcagatattcttgaacgacagacg
gaagttattaagaatcagcttacacagactattgcacgaggcgggttcgatgcctatagt
ggcataattgctgatttggcagccgactacgatccgattgatctggctgcagcagctctt
aagctgtttcaagaaggttataaagagcaagttcttattgaaaaaaagcagtttggcaat
actggtgctgaaccaggtatggtacgcttatttatcaatgccgggcgcgcacaaaaaatt
cagccgcaggatattgttcgcacaattgccgaagaagcagatattgaaggcagtattatt
ggcgtaattaatatttatgatagatttacctttgtagaagtgccggaaactgtagccgaa
cgagttttatctgttatgaataaaaatacaattaaaggctatcgcattaacatagaaccg
gcaaaaggacgataa
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