Sporomusa acidovorans: SPACI_028260
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Entry
SPACI_028260 CDS
T10566
Symbol
helD_1
Name
(GenBank) DNA helicase IV
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sacv Sporomusa acidovorans
Pathway
sacv03420
Nucleotide excision repair
sacv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sacv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPACI_028260 (helD_1)
03430 Mismatch repair
SPACI_028260 (helD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sacv03400
]
SPACI_028260 (helD_1)
Enzymes [BR:
sacv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPACI_028260 (helD_1)
DNA repair and recombination proteins [BR:
sacv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPACI_028260 (helD_1)
MMR (mismatch excision repair)
Other MMR factors
SPACI_028260 (helD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
PhoH
Viral_helicase1
DEAD
AAA_11
AAA_22
Rad17
AAA_16
UvrD_C
ATPase_2
SLFN-g3_helicase
ResIII
nSTAND3
NPHP3_N
NACHT
SMC_N
Motif
Other DBs
NCBI-ProteinID:
XFO72773
LinkDB
All DBs
Position
2949650..2951890
Genome browser
AA seq
746 aa
AA seq
DB search
MNKQEQQFEIARLAETRQEIEAQIKMSEQTSSNHQHSLHSTLKEYWKSGAGSSIDEAQFI
ETMNRQRLLSSHLNQTSDRLRKMLNSPYFGRIDFTEAGYSKTEKIYIGIGNLGNSISGDF
MVYDWRAPVSSMFYDYGRGQAAYRCPAGTISGTISLKRQYKIVNAHIEYMFDSDLKIDDE
ILQQLLGKSADDKMHTIVNSIQHEQNQVIRDQTHKILFVEGPAGCGKTSVALHRIAFLLY
HERQKLTARNVLILSPNHIFSDYISNVLPEIGEENVVQMTFQDYVTQSITNHSLQTETRK
NYFEKMLSAHPNKVRASAIKFKSSKEFREALIKYLNWLASDWINTHPAIIIRGKTFFRQD
EWRHYYTDSFSKMPPALRLEKIRIIIQNRMRDFVHTIREEKAREISDRGEEINEKVIKAL
ARIQARDELKPITDKIEKLTTLDAEVEYKNLFTDNRLFQKTGISLPVEWGLIKKRTCKSL
NNRWLPYEDIGPFLYFQGVLHGFAINTAIKHVVIDEAQDYTAFQYQILAHMFPNSSWTIV
GDPMQAVQPFLTSSSFVEAGQILNNLETPLFFRLHKSYRSTKEIQAFCQALLPDISTGQS
INRPGSLPVVSHVNPLKLDAVLARAINSFFYQGWHSVAIITKNASEAETVYRKLIKSVSP
NLVIEENDKFHHGVVVIPSYLAKGLEFDAVLVFNANAQNYYQKSDRHILYTICTRALHRL
HLFYTDNPSPFLEQVCKNLYETVNTL
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgaataagcaggaacaacaatttgaaattgccagactggcggaaacacggcaagagata
gaagcacaaattaaaatgagcgagcaaacgtcctccaaccaccagcattctctccactct
accctgaaagaatattggaagtcaggcgctggcagctcgatagacgaggcacaatttatc
gagacgatgaaccggcagcgtttactatcttctcatcttaaccagacttcagaccgattg
cggaaaatgctaaattccccatattttggccgtattgattttactgaggctggctatagc
aaaacggaaaaaatctatattggaattggcaatctaggtaacagtattagtggcgatttt
atggtttatgactggcgtgcgccggtatcaagtatgttttatgattatggacggggtcaa
gccgcttatcgttgtcctgcgggaacaatatcaggtacaatttcgcttaaacgtcaatat
aaaattgttaacgctcatatcgaatatatgtttgattccgatttgaaaattgatgatgaa
attctgcaacaactattagggaaaagtgctgacgataagatgcataccattgttaacagt
atacagcatgaacaaaaccaagtaattcgtgatcagacccataaaattttatttgttgag
ggcccggcaggatgcggtaaaacatcggtagctctgcatcgaatcgcctttttgttgtat
catgagcgtcaaaagttaacagcaaggaatgtactgattctttcacctaatcatatattt
agcgattacatctccaatgttttacctgaaattggcgaagaaaatgtagtgcaaatgacg
tttcaggattatgtgactcaatccattaccaatcattcgctgcagactgaaacgcgtaag
aattattttgaaaaaatgctgtcggctcaccccaacaaggtgcgggcatctgccataaaa
tttaaatcgtcaaaagagttcagggaggctttgataaaatatcttaactggcttgcatca
gactggataaatacacatccggctatcataatccgcggaaaaactttttttcgtcaagat
gaatggcggcattattatacggatagttttagcaagatgccgcctgctctccgcttagaa
aaaataagaatcattattcaaaaccgcatgcgcgactttgttcatactattcgcgaggaa
aaagcaagagagatttctgaccgtggtgaggaaatcaatgaaaaggtaataaaagcattg
gctaggattcaagcaagggatgaattaaaaccaattaccgataaaattgagaaactaact
acattagacgccgaagttgagtataaaaacttatttacggataatagactatttcaaaaa
accggaatttctcttccagttgaatgggggttaatcaaaaagcgaacatgtaagtctcta
aataatagatggctaccctatgaggatatcggaccatttttgtatttccagggtgtattg
catggttttgcaattaatactgctattaagcatgtcgtaattgacgaagcacaggattat
accgcttttcaatatcaaattcttgctcacatgttccctaacagttcttggacgattgtt
ggtgatcctatgcaagccgtgcagccatttttaacatcctcctcttttgtcgaagccggc
caaatacttaataacctagaaacgccactgtttttccgcttgcacaaaagttatcgttca
acaaaggaaatacaggctttttgtcaagcactgctgccagatatatcgacaggacaatcg
attaaccgccctggttcgctgcctgttgttagtcatgtaaatccattgaaattagatgca
gtgcttgctcgtgctataaattcttttttttaccaaggatggcattctgttgccataatt
acaaagaacgcttcagaagctgaaaccgtatatcgtaagcttataaaatccgttagccct
aaccttgtcattgaagagaatgataagtttcatcatggtgtcgttgtcattccttcttat
ttggctaaaggattagaatttgatgctgtattagtgtttaatgccaacgctcagaattac
tatcaaaaatctgatcgccacatactttatactatctgcacccgggcactacatcgtctg
catctcttttatacagataatccttccccttttttagaacaggtttgtaaaaatctatat
gaaacagttaataccttataa
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