Sporomusa acidovorans: SPACI_044890
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Entry
SPACI_044890 CDS
T10566
Symbol
cshA_2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sacv Sporomusa acidovorans
Pathway
sacv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPACI_044890 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacv03019
]
SPACI_044890 (cshA_2)
03009 Ribosome biogenesis [BR:
sacv03009
]
SPACI_044890 (cshA_2)
Enzymes [BR:
sacv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPACI_044890 (cshA_2)
Messenger RNA biogenesis [BR:
sacv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPACI_044890 (cshA_2)
Ribosome biogenesis [BR:
sacv03009
]
Prokaryotic type
rRNA helicases
SPACI_044890 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
Cas3-like_C_2
Helicase_RecD
UvrA_inter
DUF5612
Motif
Other DBs
NCBI-ProteinID:
XFO74379
UniProt:
A0ABZ3J7L1
LinkDB
All DBs
Position
4645790..4647208
Genome browser
AA seq
472 aa
AA seq
DB search
MEKFRELGISDVTIRALSDMGFEEPTPIQEQAIPLLLSGKDLIGQAQTGTGKTAAFGIPL
LENIQRNTGTIFGIVLTPTRELAIQVAEELNKLGQFSQVRTLPIYGGQDIYRQIKALQRK
PQIIVATPGRLMDHMERHTVKLTDIKMVVLDEADEMLNMGFIEDIEKILRATPETRQTLL
FSATMPRQIQNLAQRFLKDPALVSIKSKEVTVPLIEQYYMELQDRQKFDVFCRLLDIQAP
ELSIVFVRTKRRVDELSEALKKRGYSAEGIHGDLTQAKRDSVLRQFRESTIDILVATDVA
ARGLDISGVSHVYNFDIPQDPESYVHRVGRTGRAGQTGLAMTFVIPRELEHLRSIERITK
RKIVRMPVPTVTEAIEGQQRLAVEKLLNQIESGGLDQYRSRAEELLAETDSVSLLAAALK
LLTKEPDTTPIKITEEAPLRIRTYGGKRKPQENRKNPPPGAKPRYKAGGFKK
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaagttcagagagctggggattagtgatgtaacaattcgtgctcttagcgatatg
ggttttgaagagccgacacctattcaggaacaggcgattccgctgttgctttccggcaaa
gatctaatcggccaggcgcagaccggtaccggcaaaacagcggcattcggtatccctttg
ctggaaaatatccaaagaaacacgggcactattttcggaattgtcctaactcccacccgt
gaattagccatccaggtggccgaagagctgaataagcttggacaattttcgcaggtgcgt
acgctgcccatctatggagggcaggatatttaccgtcaaattaaagccctgcaacgaaaa
ccgcaaatcattgttgctactcccggtcgcttaatggatcatatggaacgccacacggtt
aagctgacagatataaaaatggtcgttttggacgaagccgacgaaatgctcaacatggga
ttcattgaagatatcgaaaaaattctgagggctacgcctgagactcgccagacattactc
ttttccgcaaccatgccccgccagattcaaaatttggcccagcggttcttaaaagacccg
gctcttgtcagcattaaatccaaggaagttacggttccgctgattgaacaatattatatg
gaactgcaggaccgtcaaaaatttgacgtgttctgccgcctcctggacattcaggcgccg
gaactgtctatcgtttttgtgagaaccaaacgccgggtggatgagttgtccgaggctttg
aaaaagcggggttattcggctgaaggcattcacggcgacctcacccaggccaagcgcgat
tccgtcctgcggcaattccgggaaagcaccatcgatattctcgtcgctaccgatgtagcc
gcccgcggcctggatatcagtggcgtctcccatgtctataactttgatatccctcaagat
ccggaaagctatgtccaccgggtcggccgcaccggccgagccggtcagaccggcctggcc
atgactttcgtcattcccagggaattggaacatttacgctccattgagcgaatcaccaaa
cgaaaaattgtccggatgcctgttcctaccgtaacagaagccatcgaaggccagcagcgt
ttagcagtggaaaagctgcttaatcaaatcgaaagcggcggacttgatcaatatcggagc
cgtgccgaagaattgcttgccgaaaccgactctgtctccctgctcgcagccgcgctcaag
ctgttgactaaggaaccagataccacacctatcaaaattaccgaagaagccccgttgcgc
atccgcacttacggcggcaagcgcaagccgcaggaaaatagaaagaatcccccgccaggt
gccaagccccgctataaggcaggcggatttaaaaaataa
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