Saccharothrix sp. 6-C: IOD16_04960
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Entry
IOD16_04960 CDS
T09941
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
sacx
Saccharothrix sp. 6-C
Pathway
sacx03030
DNA replication
sacx03430
Mismatch repair
sacx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sacx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IOD16_04960
03430 Mismatch repair
IOD16_04960
03440 Homologous recombination
IOD16_04960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sacx03032
]
IOD16_04960
03400 DNA repair and recombination proteins [BR:
sacx03400
]
IOD16_04960
Enzymes [BR:
sacx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IOD16_04960
DNA replication proteins [BR:
sacx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IOD16_04960
DNA repair and recombination proteins [BR:
sacx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IOD16_04960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
QQQ77851
LinkDB
All DBs
Position
complement(1052248..1053951)
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AA seq
567 aa
AA seq
DB search
MTTQLTFDELGTPLRETTFVVFDLETTGGRADGDAITEIGAVKVRGGRVIGEFGTLVDPE
RGIPPQVVALTGITQMMVTGAPRLSTVLPAFLEFAAGAVLVAHNSGFDVGFVKAACARLG
YTWPKPTVVCTVKLARRVLSRDEAPSCRLSALAHLFGVSVQPNHRALIDARATVEVLHHL
LERVGSVGVHSLEELVAYLPEVTPAQRRKRTLASHLPSTPGVYLFRGPSEEVLYVGTASD
LRRRVRQYFTASEGRKRLREMVALAVRVDAVECSHSLEAEVRELRLLTAHKPAYNRRSKN
QGQAWWLVLTDEAFPRLSVVRTPREGALGPFRSRLLAETALEAMLEAVPLRACSIRIPAR
NASATPCALFELGRCKAPCAGRQSVDEYSPAASAFRRLVAGADVAPLRELTAQIDALALA
HRFEDAATRRDRMSSLVRSLDRAQRLAGLAALPELVAARPDGSGGWEFAVVRHGRLASAG
VARRGTRPMPVVDALVASAETVIPGEGPLFGAPAEEVGVVLRWIDRPGTRLVHCDRPWTS
PASAAGAWRDWVARAEAGRDQYRMAGH
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgactactcagctcacgttcgacgaactgggcacaccgctgcgcgagaccacgttcgtc
gtcttcgacctggagaccaccggtggccgggcggacggtgacgcgatcaccgagatcggc
gcggtgaaggtgcgcggcgggcgggtgatcggcgagttcggcaccctcgtcgaccccgag
cggggcatcccgccgcaggtcgtggccctgaccgggatcacccagatgatggtgaccggc
gcgccgcggctgtccacggtgctgcccgcgttcctcgagttcgccgccggcgcggtgctg
gtcgcgcacaactccggcttcgacgtggggttcgtcaaggccgcctgcgcccggctcggg
tacacgtggcccaagccgaccgtcgtgtgcacggtgaagctggcccgccgggtgctcagc
cgggacgaggcgccgagctgccggctgtcggcgttggctcacctgttcggggtgtccgtg
cagccgaaccaccgggcgctgatcgacgcccgcgcgaccgtcgaggtgctgcaccacctg
ctggagcgggtcggttcggtcggggtgcactcgctggaggaactggtcgcctacctgccc
gaggtgacgccggcgcaacgtcgcaagcggacgctcgcctcgcacctgccgtccaccccg
ggcgtctacctgttccgcgggccgtcggaggaggtgctctacgtcggcacggcgtccgac
ctgcggcggcgggtccggcagtacttcaccgcgagcgaggggcgcaagcggctgcgggag
atggtcgcgctggccgtgcgggtcgacgcggtggagtgctcgcactcgttggaggcggag
gtgcgggagctgcggctgctcaccgcgcacaagcccgcctacaaccggcgttccaagaac
caggggcaggcgtggtggctcgtgctgacggacgaggcgttcccccgcctctccgtggtc
cgcacgccgcgcgaaggggcgctcggcccgttccggtcccggctgctggccgagacggcg
ctggaggcgatgttggaggccgtgccgctgcgggcgtgctcgatccggatccccgcgcgc
aacgcgtccgccacgccgtgcgccctgttcgagctgggccggtgcaaggcgccgtgcgcg
ggacggcagtcggtggacgagtactcccccgccgcttcggcgttccgccggctggtggcc
ggggcggacgtcgcgccgctgcgggagctgaccgcgcagatcgacgcgctcgccctcgcg
caccggttcgaggacgccgccacccgccgcgaccgcatgtcgtcgttggtgcgctcgctg
gaccgggcacagcggctcgccggactggccgcgctgcccgagctggtggccgcgcgcccc
gacgggtccggcgggtgggagttcgccgtggtgcggcacgggcggttggcgtcggccggg
gtggcgcgtcggggcacgcggccgatgccggtggtcgacgcgctggtggcgtcggcggag
acggtgatcccgggcgagggcccgctgttcggcgcgcccgccgaggaggtcggcgtggtg
ctgcggtggatcgaccggccggggacgcggctcgtccactgcgaccgcccgtggacgtcg
ccggcctccgccgccggcgcgtggcgggactgggtggcccgcgccgaggccggtcgcgac
cagtaccggatggcgggccactag
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