Saccharothrix sp. 6-C: IOD16_11845
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Entry
IOD16_11845 CDS
T09941
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sacx
Saccharothrix sp. 6-C
Pathway
sacx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IOD16_11845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacx03019
]
IOD16_11845
03009 Ribosome biogenesis [BR:
sacx03009
]
IOD16_11845
Enzymes [BR:
sacx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IOD16_11845
Messenger RNA biogenesis [BR:
sacx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IOD16_11845
Ribosome biogenesis [BR:
sacx03009
]
Prokaryotic type
rRNA helicases
IOD16_11845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQQ79053
LinkDB
All DBs
Position
complement(2613989..2615677)
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AA seq
562 aa
AA seq
DB search
MNDEPDDRTSFADLGLRPELLRALSGLGYEEPTPIQREAIPPLSAGRDLLGQAATGTGKT
AAFALPVLERMAGGERDRRAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQPI
GRQLRVLEQGVDVVVATPGRAVDHLSRGTLKLEHLEVVVLDEADEMLDMGFAEDLDTILA
ETPADRQTVLFSATMPGRIDRLARTHLSDPVRITIGREQAEPGEAPRVRQSAYVVPRAHK
PAALGRVLDVEAPTAAIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMTRLR
NGTADLLVATDVAARGLDIEQLTHVVNYNVPSAPESYVHRIGRIGRAGREGVAITLAEPR
EHGMLKTIERVTKQRIHMEKVPTIADLRARKLELTRAALHESLLEDDLESFRVVVETLTD
EFDVMEVALAAVKLAHEATGAAADEEEIPEYVPRSGPAGERRGREGGGERREPRRPRRPS
AGMTRLFVGAGRSSGIRPQDLVGAIAGEARLNGRDIGAIEIADRFSLVEVPDSAAQQVIA
SLRGATIKGRKVTVRRERDDPR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgagcccgacgaccggaccagcttcgccgacctcgggttgcgccccgaactg
ctccgggcgctgtccggcctcggctacgaggagcccacccccatccaacgtgaagccatc
ccgccgctgagcgccggccgcgacctgctcggccaggccgccaccggcaccggcaagacg
gccgcgttcgcgttgcccgtgctggagcgcatggcgggcggcgagcgcgaccggcgcgcc
ccgttcgcgctcgtgctggtgccgacgcgggagctggcggtgcaggtctccgaagcggtg
caccggtacggccgggagctgggcgcgcgggtgctgccgatctacggcggccagcccatc
gggcggcagctgcgggtgctggagcagggcgtggacgtcgtggtggccacgccgggccgc
gcggtcgaccacctcagccggggcacgctgaagctggagcacctggaagtcgtcgtgctc
gacgaggccgacgagatgctcgacatgggcttcgccgaggacctggacacgatcctggcc
gagacgccggcggaccggcagaccgtgctgttctccgcgacgatgcccggccgcatcgac
cgcctggcccgcacgcacctgtccgacccggtgcgcatcaccatcggccgcgagcaggcc
gagccgggcgaggcgccgcgggtgcggcagagcgcgtacgtcgtgccccgcgcgcacaag
ccggccgcgctgggccgggtgctggacgtcgaggcgccgaccgcggcgatcgtgttctgc
cgcacgcgcgacgaggtcgaccagctcaccgagacgctgaacgggcgcggctaccgggcc
gagtcgctgcacggcggcatcagccaggagcagcgcgaccgcgtgatgacgcggctgcgc
aacggcacggcggacctgctggtggccaccgacgtggcggcccgcggcctggacatcgag
cagctgacgcacgtcgtgaactacaacgtgccgtccgcgccggagtcctacgtgcaccgc
atcggccggatcgggcgcgcgggccgcgagggcgtggcgatcaccctggccgagccgcgc
gagcacggcatgctcaagaccatcgagcgcgtcaccaagcagcgcatccacatggagaag
gtcccgacgatcgcggacctgcgggcgcgcaagctggagctgacccgcgccgcgctgcac
gagagcctgctggaggacgacctggagagcttccgggtcgtggtggagacgctgaccgac
gagttcgacgtcatggaggtggcgctggcggcggtcaagctcgcgcacgaggccaccggc
gcggcggcggacgaggaggagatcccggagtacgtgccgaggtccgggccggccggcgag
cgccggggacgcgagggcggcggcgagcgccgtgagccgcgccgcccacgccgcccgtcc
gcgggcatgaccaggctgttcgtcggcgcgggccgcagctcgggcatccggccgcaggac
ctggtcggcgcgatcgcgggcgaggcgcggctcaacggccgcgacatcggcgcgatcgag
atcgccgaccggttctcgctggtggaggtgccggactcggcggcgcagcaggtcatcgcg
tcgttgcggggcgcgaccatcaagggccgcaaggtgaccgtgcggcgggagcgcgacgac
ccgcgctga
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