Saccharothrix sp. 6-C: IOD16_17075
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Entry
IOD16_17075 CDS
T09941
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sacx
Saccharothrix sp. 6-C
Pathway
sacx00040
Pentose and glucuronate interconversions
sacx01100
Metabolic pathways
sacx02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sacx00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
IOD16_17075
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IOD16_17075
Enzymes [BR:
sacx01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
IOD16_17075
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Glyco_hydro_28
TAT_signal
Motif
Other DBs
NCBI-ProteinID:
QQQ79947
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All DBs
Position
3984271..3985275
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AA seq
334 aa
AA seq
DB search
MSDISRRSLLAGAAATALTAVAARAATAEPARTSRVTTNPVWAAPFQTADGFAGTNTLGQ
NGTTGGVGGPVVTVRDTETFLDYCDRNEPYVIQVDGIMTFSSKQGLRSNKTVIGLPGAEI
RGGGLDMYRRQNVIIRNLRFSGADDDAISIQQSSHHIWIDHCDLSGGADGLIDIVRGADF
ITVSWNHFHDHSKTALLGHSDSNAGQDTGKLRVTFHHNYFNATEQRHPRVRFGEPVHVYN
NYFRNNRLYGVASTENAGVLVEANYFENVPHPVYSGYDESGPGRVVQRDNIFVNSGAPQT
LGTVVEPRTYYAYTPDNPSTLPTTVPAGAGVGRI
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatcagcaggcgcagcctcctcgcgggcgccgccgccacggccctcaccgcc
gtcgccgcacgcgccgcgacggccgaacccgcccggaccagccgggtcaccacgaacccc
gtgtgggcggcgccgttccagaccgccgacgggttcgccggcacgaacaccctcggccag
aacggcaccaccggcggggtgggcgggccagtggtcacggtgcgcgacaccgagacgttc
ctggactactgcgaccgcaacgagccctacgtgatccaggtcgacgggatcatgacgttc
agcagcaagcagggcctgcggtccaacaagaccgtcatcggcctgcccggcgcggagatc
cgcggcggcggcctggacatgtaccgcaggcagaacgtgatcatccgcaacctgaggttc
agcggcgcggacgacgacgcgatcagcatccagcagtcctcgcaccacatctggatcgac
cactgcgacctcagcggcggcgcggacgggctgatcgacatcgtccggggcgcggacttc
atcaccgtgtcgtggaaccacttccacgaccacagcaagaccgcgctgctcggccactcc
gactccaacgcgggccaggacaccggcaagctgcgcgtcacgttccaccacaactacttc
aacgccaccgagcagcggcacccccgcgtccgcttcggcgaacccgtccacgtctacaac
aactacttccggaacaaccgcctctacggggtcgcgtccaccgagaacgccggcgtgctg
gtcgaggccaactacttcgagaacgtgccgcaccccgtctactccgggtacgacgagagc
gggccggggcgcgtggtgcagcgcgacaacatcttcgtcaactccggcgcgccgcagacc
ctcggcacggtcgtcgaaccgcgcacctactacgcctacaccccggacaacccgtcgacc
ctgcccaccaccgtccccgccggcgccggcgtcggccggatctga
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