Saccharothrix sp. 6-C: IOD16_17080
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Entry
IOD16_17080 CDS
T09941
Name
(GenBank) right-handed parallel beta-helix repeat-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sacx
Saccharothrix sp. 6-C
Pathway
sacx00040
Pentose and glucuronate interconversions
sacx01100
Metabolic pathways
sacx02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sacx00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
IOD16_17080
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IOD16_17080
Enzymes [BR:
sacx01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
IOD16_17080
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
TAT_signal
NosD
Terminase_6N
dCMP_cyt_deam_2
Motif
Other DBs
NCBI-ProteinID:
QQQ79948
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All DBs
Position
3985295..3986290
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AA seq
331 aa
AA seq
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MSDINRRRLLAGTALAAVAAAVPRAAWAGVEPSAVADGFAGVTALGQNGTTGGAGGQAVT
VTTAAALADYVGRKEPYVISVSGRIQTGDEMLTVVANKTIVGVGSTAEITGGGLQLGSTT
RPGNNVIIRNLRFTNASDDSISVTNSAHHVWIDHCDLSDGYDGLLDIKRNSDYVTVSWNH
FHHHSKAALLGHSDTYTSDKGKLRVTYHHNFFDGTDQRHPRVRFGEPVHVYNNYYRGNSL
YGVASTMDAGVVVEGNYFENVAHPILSGYDKSGPGRVVERNNIYAGSGAPETLGAVVEPR
TYYSYAVDDPASVPRLVTAGAGVGRVQGVAR
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatcaaccgtcgtcggttgctcgccggcacggcactcgccgccgtggccgcc
gccgtgccacgcgccgcgtgggccggtgtcgaaccgtcggccgtcgccgacgggttcgcc
ggcgtcaccgcgctgggccagaacggcaccaccggcggcgcgggcggccaggcggtcacc
gtgaccacggccgccgccctcgccgactacgtcggccgcaaggagccgtacgtcatctcc
gtgtccggccgcatccagaccggcgacgagatgctgaccgtcgtcgcgaacaagaccatc
gtcggcgtcggctccaccgccgagatcaccggcggcgggctgcaactcggctccaccacc
cgccccggcaacaacgtgatcatccgcaacctgcggttcaccaacgcctcggacgactcg
atcagcgtcaccaactccgcgcaccacgtgtggatcgaccactgcgacctgtccgacggc
tacgacggcctgctggacatcaagcgcaactccgactacgtcaccgtgtcgtggaaccac
ttccaccaccacagcaaggccgccctgctcggccactccgacacctacaccagcgacaag
ggcaagctgcgcgtcacctaccaccacaacttcttcgacggcaccgaccagcggcacccg
cgcgtccgcttcggcgagcccgtgcacgtctacaacaactactaccggggcaactcgctc
tacggcgtcgcgtccaccatggacgccggagtcgtggtcgagggcaactacttcgagaac
gtcgcccacccgatcctgtccggctacgacaagagcgggccgggacgcgtggtggagcgc
aacaacatctacgcgggctccggcgccccggagacgctcggcgccgtcgtggagccacgc
acctactacagctacgcggtggacgacccggcgtcggtgccacgtctcgtcacggccggc
gccggtgtcggccgcgtccagggggtggctcggtga
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