Saccharothrix sp. 6-C: IOD16_28910
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Entry
IOD16_28910 CDS
T09941
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sacx
Saccharothrix sp. 6-C
Pathway
sacx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IOD16_28910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacx03019
]
IOD16_28910
03016 Transfer RNA biogenesis [BR:
sacx03016
]
IOD16_28910
Enzymes [BR:
sacx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IOD16_28910
Messenger RNA biogenesis [BR:
sacx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IOD16_28910
Transfer RNA biogenesis [BR:
sacx03016
]
Prokaryotic type
tRNA degradation factors
IOD16_28910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
OB_cyt-4
KH_PNO1_2nd
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QQQ75101
LinkDB
All DBs
Position
complement(6862143..6864386)
Genome browser
AA seq
747 aa
AA seq
DB search
MTDIEVHETSAVIDNGRFGTRTIRFETGRLARQAAGSVVAYLDDETMLLSATTASKHPKE
HFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQ
VVITVMSLNPADLYDVVAINAASASTQLAGLPFSGPIGGVRVALIEGQWVAFPTHEQLEK
AVFDMVVAGRVVGDDVAIMMVEAEATDHVIDLIGEGAQAPTEEVVAAGLEASKPFIKALC
DAQAQLAQVAAKATGEFPTYPAYQSDAFEAVEQAGSGELSQALTIGGKQERESRIDEIKA
SVLEKLAEQFEGREKEVGAAFRSLTKKLVRQRILRDKVRIDGRGLTEIRSLSAEVELIPR
AHGSALFERGETQILGVTTLNMLRMEQQIDSLAPETHKRYLHHYNFPPFSTGETGRVGSP
KRREIGHGALAERALMPVLPKREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVP
LKAPVSGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPSEVLGAALGQARDARLTILEVMAEAIDSPDEMSPFAPRVTSVKIPTDKIGEVIGPKG
KMINSITEQTGADISIEDDGTIYVGAADGPSAEAAIGLINAIANPQLPKVGERFLGTVVK
TAAFGAFVSLLPGKDGLIHISKLGNGKRIAKVEDVVKVGDKLQVEIADIDQRGKISLVLV
SDDAEQAPAGDAPAQDTAPAEAEANAQ
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgacggacatcgaggtccacgagacttcagccgtgatcgacaacggtcggttcggcacg
cgcaccatccgcttcgaaaccggtcgcctggcccgccaggcggcgggctcggtcgtcgcc
tacctggacgacgagacgatgctgctgtcggcgacgacggcgtcgaagcaccccaaggag
cacttcgacttcttccccctcacggtggacgtcgaggagcgcatgtacgcggcgggccgc
atccccggctcgttcttccgccgcgagggccgcccgtcgaccgacgcgatcctgacctgc
cgcctcatcgaccggccgctgcgcccgtccttcgtggacggtctgcgcaacgagatccag
gtcgtcatcacggtgatgagcctgaacccggccgacctgtacgacgtcgtggcgatcaac
gccgcgtcggcgtccacgcagctcgcgggcctgccgttctcgggccccatcggcggcgtc
cgggtggcgctgatcgagggccagtgggtggcgttcccgacccacgagcagctcgagaag
gccgtgttcgacatggtcgtcgccggtcgggtcgtcggtgacgacgtcgcgatcatgatg
gtcgaggccgaggccaccgaccacgtcatcgacctgatcggcgagggcgcgcaggcgccg
accgaagaggtcgtggccgccggtctggaggcgtccaagccgttcatcaaggcgctgtgc
gacgcgcaggcccagctggcgcaggtcgcggcgaaggccaccggcgagttcccgacctac
ccggcctaccagtccgacgccttcgaggccgtcgagcaggccggctccggcgagctgtcg
caggcgctgaccatcggcggcaagcaggagcgcgagtcccgcatcgacgagatcaaggcg
tcggtgctggagaagctggccgagcagttcgagggtcgcgagaaggaggtcggcgcggcg
ttccgctcgctgaccaagaagctcgtgcgccagcgcatcctgcgcgacaaggtccgcatc
gacggccgcggcctcaccgagatccggtcgctgtcggccgaggtcgagctgatcccgcgg
gcgcacggctcggcgctgttcgagcgcggcgagacccagatcctgggtgtcaccacgctg
aacatgctgcgcatggagcagcagatcgactcgctggccccggagacgcacaagcgctac
ctgcaccactacaacttcccgccgttctccaccggtgagaccggccgcgtgggctcgccc
aagcgccgcgagatcggccacggcgcgctggccgagcgggcgctgatgcccgtgctgccc
aagcgcgaggagttcccctacgcgatccgccaggtctccgaggcgctgagctccaacggc
tcgacgtccatgggctcggtctgcgcgtccacgatgtcgctgctcaacgccggcgtgccg
ctgaaggcgccggtctcgggcatcgccatgggcctggtgtccgacgaggtcgacggcaag
acggagtacgtcgcgctgaccgacatcctcggcgccgaggacgcgttcggcgacatggac
ttcaaggtcgccggcaccaaggagttcgtcaccgcgctgcagctcgacaccaagctggac
ggcatcccgtccgaggtgctcggcgcggccctgggccaggcccgcgacgcgcgcctgacc
atcctggaggtcatggccgaggccatcgacagcccggacgagatgagcccgttcgcgccg
cgcgtgacgtcggtcaagatcccgaccgacaagatcggcgaggtcatcggcccgaagggc
aagatgatcaactcgatcaccgagcagaccggcgccgacatctccatcgaggacgacggc
acgatctacgtcggcgcggcggacggcccgtcggccgaggccgcgatcggcctgatcaac
gcgatcgcgaacccgcagctgccgaaggtgggcgagcgcttcctgggcaccgtggtgaag
accgcggcgttcggcgcgttcgtgtccctgctcccgggcaaggacggcctgatccacatc
tccaagctgggcaacggcaagcgcatcgccaaggtggaggacgtcgtcaaggtcggcgac
aagctccaggtcgagatcgccgacatcgaccagcgcggcaagatcagcctggtcctggtc
agcgacgacgcggagcaggccccggccggcgacgcgcccgcgcaggacaccgcacccgcc
gaggccgaggccaacgcgcagtga
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integrated database retrieval system
