Stenotrophomonas acidaminiphila: AOT14_24600
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Entry
AOT14_24600 CDS
T04107
Symbol
rnr
Name
(GenBank) ribonuclease R (RNase R)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sacz
Stenotrophomonas acidaminiphila
Pathway
sacz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT14_24600 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacz03019
]
AOT14_24600 (rnr)
03016 Transfer RNA biogenesis [BR:
sacz03016
]
AOT14_24600 (rnr)
Enzymes [BR:
sacz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AOT14_24600 (rnr)
Messenger RNA biogenesis [BR:
sacz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOT14_24600 (rnr)
Transfer RNA biogenesis [BR:
sacz03016
]
Prokaryotic type
tRNA degradation factors
AOT14_24600 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ALJ28825
UniProt:
A0A0S1B1E9
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All DBs
Position
complement(2723375..2725828)
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AA seq
817 aa
AA seq
DB search
MKNKKTPGAGKAPKSAPGATPGTPRKPAKLPPWMPESLATPAKGGRGKSRDSAPPKSFVR
GRSRPAPAAVLDDPYAAREAERYAQPIASREAILQLLDRCDGPQNAEEIGARLGLTEPER
ADALAKRLGAMVRDGQLVQNRRGGFAPVLVTNLIPGVVIANPEGFGFLRPDEGGDDLFLP
PYEMRKVMHGDRALANVTGIDRRGRREGSIARVLERGVNRLIGNFSVELGINYVVPDDKR
IQRSIQIPADATGGAKDGQLVVCELTQAPDTRRPPIGKVIAVLGDKLTPSLVVETAIHGH
DLPHEFPPEVLDEATAIPMTVDPTMIGTRVDLRALPLVTIDGEDAKDFDDAVFCEPNRDG
FRLVVAIADVSHYVRPGTPLDDEALKRATSVYFPGYVVPMLPETLSNGICSLRPKEDRMC
FVCDMQVDRKGEVVQSRFYEAVMNSHARLTYTQVWNAVGEDDADAKAFIGPLLPQIQSLH
QLYRILAKARERRGAIEFESSEVRFVLDNRGEVTQAGMLVRNDAHKLIEECMIAANVEAA
RYLLATHIPAPFRVHERPPESKFADLLEFLKEFKLSLPAWSKVQPGDYTRLLKKVRERPD
AALLESVLLRSQSLAVYSPDNNGHFGLALEAYAHFTSPIRRYPDLLVHRAIKYALTGGPR
DKYTYTPREMAALALQCSERERRADEAEREVDERFRAAWMEKHVGGQFDGVISGVTSFGL
FVELDESKVNGLVHVTQLPHDYYQFDPMRKTLTGDRRGNQFRLGDRVRILVLKASMEDRK
IDFRLVERLDGDASAADQGLPPLPARGKPAKRAKQKY
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacaaaaagacccccggggccggcaaggcccccaagtccgcccccggcgcaacg
ccgggaacgccccgcaagccggccaagctgccgccgtggatgccggagagcttggccacg
cccgccaagggcggccgcggcaaatcccgcgacagcgcgccaccgaagagtttcgtgcgt
ggccgctcgcggccggcgccggccgcggtcctcgacgacccctatgccgcgcgtgaagcc
gagcgctacgcccagcccattgccagccgtgaggcgatcctgcagctgctggaccgctgc
gacgggccgcagaacgccgaggagatcggtgcgcggctcggcctgaccgaaccggagcgc
gccgacgcgctggccaagcgcctgggcgcgatggtgcgcgacgggcagctggtgcagaac
cgccgcggcggcttcgccccggtgctggtcaccaacctgattcccggtgtggtcatcgcc
aacccggaagggttcggcttcctgcgcccggacgaaggtggcgacgacctgttcctgccg
ccgtacgagatgcgcaaggtcatgcatggcgaccgcgcgctggccaatgtcaccggcatc
gaccgccgcggccgccgcgaaggcagcatcgcgcgcgtgctcgagcgtggcgtcaaccgc
ctgatcggcaacttcagcgtcgagctgggcatcaactacgtggtgccggacgacaagcgc
atccagcgcagcatccagatcccggccgacgccaccggcggtgcgaaggacggccagctg
gtggtgtgcgaactgacccaggcgccggatacgcggcgcccgccgatcggcaaggtcatc
gccgtgctcggcgacaagctgaccccgtcgctggtggtggaaaccgccatccacggccac
gacctgccgcatgagttcccgccggaagtgctcgacgaggcgacggcgatcccgatgacg
gtggacccgacgatgatcggcacccgcgtggacctgcgcgcgctgccgctggtgaccatc
gacggcgaggacgccaaggacttcgacgacgcggtgttctgcgagccgaaccgggacggc
ttccggctggtggtggccatcgccgacgtctcgcactacgtgcgccccggcacgccgctg
gacgatgaggcgctcaagcgcgccacctcggtgtacttccccggctacgtggtgccgatg
ctgccggagacgctgtccaacggcatctgctcgctgcggccgaaggaagaccgcatgtgc
ttcgtctgcgacatgcaggtggaccgcaagggcgaggtggtgcagtcgcgcttctacgag
gcggtgatgaactcgcatgcgcgcctgacctacacccaggtgtggaacgcggtgggcgag
gacgacgccgacgccaaggcgttcatcggcccgctgctgccgcagatccagagcctgcac
cagctgtaccgcatcctggccaaggcgcgcgaacgccgcggcgcgatcgagttcgagtcc
tcggaagtgcgcttcgtgctggacaaccgcggcgaggtcacccaggccggcatgctggtg
cgcaacgacgcgcacaagctgatcgaggagtgcatgatcgcggccaacgtcgaggccgcg
cgctacctgctggcgacccatatcccggcaccgttccgggtgcacgagcggccgccggaa
tccaagttcgccgacctgctggagttcctcaaggaattcaagctgagcctgccggcgtgg
agcaaggtgcagccgggcgactacacccggttgctgaagaaggtgcgcgagcgtccggac
gcggcgctgctggagtcggtgctgctgcgcagccagtcgctggcggtgtactcgccggac
aacaacggccacttcggcctggcgctggaggcctacgcgcacttcacctcgccgatccgc
cgctatccggacctgctggtgcaccgtgccatcaagtacgcgctcaccggcggcccgcgc
gacaagtacacctacacgccgcgcgagatggcggcgctggcgctgcagtgttccgagcgc
gagcgccgtgccgacgaagccgagcgcgaggtggacgagcggttccgcgccgcctggatg
gagaagcacgtcggcggccagttcgatggcgtcatcagcggcgtgaccagcttcgggctg
ttcgtggagctggacgaatccaaggtcaacgggctggtacacgtcacccagctgccgcac
gactattaccagttcgacccgatgcgcaagacgcttaccggcgaccgccgcggcaaccag
ttccggctgggcgaccgggtgcgcatcctggtgctcaaggccagcatggaggaccgcaag
atcgacttccgcctggtcgagcggctcgatggcgacgccagcgcggcggaccagggcctg
ccgccgctgccggcgcgcggcaagccggccaagcgcgccaagcagaagtactga
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