Stenotrophomonas acidaminiphila: AOT14_25280
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Entry
AOT14_25280 CDS
T04107
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sacz
Stenotrophomonas acidaminiphila
Pathway
sacz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT14_25280 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacz03019
]
AOT14_25280 (deaD)
03009 Ribosome biogenesis [BR:
sacz03009
]
AOT14_25280 (deaD)
Enzymes [BR:
sacz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOT14_25280 (deaD)
Messenger RNA biogenesis [BR:
sacz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOT14_25280 (deaD)
Ribosome biogenesis [BR:
sacz03009
]
Prokaryotic type
rRNA helicases
AOT14_25280 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UTP25_NTPase-like
adh_short
HZS_alpha
Motif
Other DBs
NCBI-ProteinID:
ALJ28890
UniProt:
A0A0S1B1H3
LinkDB
All DBs
Position
complement(2797242..2799164)
Genome browser
AA seq
640 aa
AA seq
DB search
MSQESPAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPAMLQGRDVLGQAQTGTGKT
GAFALPVLSNIDISATRPQVLVLAPTRELAIQVAEAFQTYSASMPGFRVLPVYGGQPYGQ
QLSALRRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PETRQVALFSATMPSQIRRIAQTYLRDPVEVTIASKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIVFARTKAGTEELAEKLQARGLAAAAINGDMQQAQRERTIGQLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGML
RQIERATRQPIEEMQLPTVDAVNDHRVAKFMERISQTLADGDTDFYRDLVQRYENEHNVP
AVEIAAALARLLQGDSPFLLAPPVRERREPPATRNERPARDGGFPRHREDRGERPARFEP
RFERAPQADDGERPARAEGTFEPRQRREMPPRGAPEFGMETYRIEVGHMHGVKPANIVGA
IANEAGLESRYIGRIDIHDDHSVLDLPAEMPADTLQHLQKVWVSGQQLRMRRVEPGEAQD
AAPASKPRFGKGPRPAGRPGGPRAPGGRPGGFKPRGPRGA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaatcccccgcgccgctgctgttcgcagacctcggcctgtccgacgctgtg
atgaaggccgtggccgccgtcggctacgagacgccgtcgccgatccaggccgccaccatc
ccggcgatgctgcaaggccgcgacgtgctcggccaggcgcagaccggcaccggcaagacc
ggcgccttcgcgttgccggtgctgtccaacatcgacatttccgccaccaggccgcaggtg
ctggtgctggccccgacccgcgaactggccatccaagtcgccgaggccttccagacctat
tcggcgtcgatgcccggcttccgcgtgctgccggtgtacggcggccagccctatggccag
cagctgtcggcgctgcgccgcggcgtgcacgtcgtggtcggcacccccggccgcgtcatc
gaccacctggaccgcggcacgctggacctgtccgagctgaagacgctggtgctggacgag
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaggccgtgctcaagaagctg
ccggaaacccgccaggtcgcactgttctcggcgaccatgccgtcgcagatccgccgcatc
gcgcagacctacctgcgcgacccggtggaagtgaccatcgcctccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcggcatgcacaagctcgatgcgctgacc
cggatcctggaagtggaaccgttcgacgcgatgatcgtcttcgcgcgtaccaaggccggc
accgaggaactggccgagaagctgcaggcgcgcggcctggccgccgcggccatcaacggc
gacatgcagcaggcccagcgcgagcgcaccatcggccagctgaaggaaggcaagctggac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgcgccgggcgcagcggcgaggcgatcctgttcgtcaccccgcgcgagaagggcatgctg
cgccagatcgagcgcgccacccgccagccgatcgaggaaatgcagctgccgacggtggac
gcggtcaacgaccaccgcgtggccaagttcatggagcgcatcagccagaccctggccgat
ggcgacaccgatttctaccgcgacctggtgcagcgctacgagaacgagcacaacgtgccg
gcggtggagatcgccgccgcgctcgcacgcctgctgcagggcgattccccgttcctgctg
gccccgccggtgcgcgaacgccgcgagccgccggccacgcgcaacgagcgtccggcgcgc
gatggcggtttcccgcgccaccgcgaggaccgtggcgagcgcccggcgcggttcgagccg
cgcttcgagcgtgccccgcaggcggatgacggcgagcgcccggcgcgtgccgaaggcact
ttcgaaccgcgccagcgccgcgagatgccgccgcgcggcgcaccggagttcggcatggag
acctaccgcatcgaggtcggccacatgcacggcgtgaagccggccaacatcgtcggcgcc
atcgccaacgaggccgggctggagagccgctacatcggccgcatcgatatccacgacgac
cactcggtgctcgacctgccggcggaaatgccggccgataccctgcagcacctgcagaag
gtgtgggtgtcgggccagcagctgcgcatgcgcagggttgagccgggcgaagcgcaggac
gccgcgccggcgtccaagccacgcttcggcaagggtccccggcctgccgggcgtcccggc
ggtccgcgggcaccgggcgggcgcccggggggcttcaagccacgcggtccgcgcggtgcc
tga
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