Stenotrophomonas acidaminiphila: AOT14_35590
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Entry
AOT14_35590 CDS
T04107
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sacz
Stenotrophomonas acidaminiphila
Brite
KEGG Orthology (KO) [BR:
sacz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacz03019
]
AOT14_35590 (hrpB)
Enzymes [BR:
sacz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AOT14_35590 (hrpB)
Messenger RNA biogenesis [BR:
sacz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AOT14_35590 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
Motif
Other DBs
NCBI-ProteinID:
ALJ29893
UniProt:
A0A0S1B4E9
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All DBs
Position
3897627..3900128
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AA seq
833 aa
AA seq
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MARPDFPISPLLPAIADSLAAHPRLVLEAPPGAGKTTQVPLALLDAPWLQGGRIVMLEPR
RVAARSAAQFMARQLGEPVGETVGYRIRFENRISARTRIEVVTEGILTRMLQDDPLLDGV
GALLFDEFHERHLSADLGLALALDVQAGLREDLRIVVMSATLDGERLAAFLDAPRLSSEG
RGFPVEIAHFPPRREEALEAQARRAVEHALAAHPGDVLVFLPGQREIARVQAALDAVRAA
GTDVLPLHGELPVEQQSRVLQPDPDGRRRVVLATNVAESSVTLPGVRVVVDAGLAREPRY
DPNSGFSRLDAVPISQASADQRAGRAGRVASGWALRLWPQSQRLEPQRRPEMAQVELAAL
ALELAAWGSDALRFVDPPPAGALAAARELLQRLGALDGNTITATGRRMLALGTHPRLAAM
LIAAADPREQALAADLAALLEARDPLRQGGDALAARWRALAAMRGGHVPHDASRGALAAI
DAASRQWRRRLRCDATPPDDVEARALGDLLAHAFPDRIAARHPSDPLRYQLANGRSARLH
DNSDLRGEPWLVISELRFEARDALLLRAAPVDEARLRTDFPQRFHQRDVVRWNGERRALE
ARRESGFDRIVLDSRPAGRVDPAQAARALTDAVRELGLDALPWTGALRQWRHRVQGLRQW
MPELGLPDLSDAALLDTLDTWLLPAFAGKTRLDALGEPELGEALKSGIDWNLRQQIDRHA
PVRISVPSGMDRAIDYAMDDDGLTPRPPVLAVKLQELFGLADTPRIADGRVPLLLHLLSP
GGKPLQVTGDLRNFWENTYAEVRKEMKGRYPRHPWPDDPWSATATHRAKPRGT
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcacgccccgacttccccatctccccgctgttgccggccatcgccgacagcctggcc
gcgcacccgcggctggtactcgaagccccgcccggcgccggcaagaccacccaggtgccg
ctggcgctgctcgacgctccgtggctgcagggcggccggatcgtgatgctggaaccgcgc
cgcgtcgccgcgcgcagtgccgcccagttcatggcgcggcagctcggcgagccggtcggc
gagaccgtcggctaccgcatccgcttcgagaacaggatctccgcgcgtacccgcatcgag
gtcgtcaccgaaggcatcctcacccgcatgctgcaggacgacccgttgctggacggcgtc
ggcgcgctgctgttcgacgagttccacgagcgccacctgtcggccgacctcggcctggca
ctggcgctggacgtgcaggccgggctgcgtgaggacctgcgcatcgtggtgatgtcggcc
accctcgacggcgagcgcctggccgcgttcctcgacgcgccccgcctgtccagcgagggc
cgtgggtttccggtggagatcgcgcatttcccgccacggcgcgaggaagcgctggaagcg
caggcgcggcgcgcggtcgaacacgcgctggcggcgcatccgggcgacgtgctggtgttc
ctgccgggccagcgcgagatcgcgcgcgtgcaagccgcgctggacgcggtgcgcgcggcc
ggtaccgacgtactgccgctgcacggcgaactgcctgtggaacagcagtcgcgggtgctg
caacccgaccccgacgggcgccgccgcgtggtgctggcgaccaacgtcgccgaatcctcg
gtgaccctgcccggcgtgcgcgtggtggtcgacgcgggcctggcgcgcgagccgcgctac
gaccccaacagcggtttctcgcggctggatgcggtgccgatatcgcaggcgtcggcggac
cagcgcgccggccgcgccggccgcgtggcctctggctgggcgctgcgcctgtggccgcaa
tcgcaacggctggagccgcagcggcgcccggagatggcgcaggtggagctggccgcgctg
gcgctggaactggctgcctggggcagcgacgcgctgcgcttcgtcgatccaccgccggcc
ggtgcgctggctgccgcgcgggaactgctgcagcggctcggtgcgctcgacggcaacacg
atcaccgctaccgggcggcgcatgctggcgctgggtacccacccacggctggcggcgatg
ctgatcgccgcggccgatccacgcgagcaggcgctggctgccgacctggccgcgctgctg
gaggcacgcgacccactgcgccagggcggcgacgcgctggccgcacgctggcgcgcactg
gcggcgatgcgcggtggccacgtgccgcacgatgccagccgcggcgcgctggccgccatc
gatgcggccagccggcagtggcggcggcgcctgcgctgcgacgccacgcccccggacgac
gtcgaggcgcgcgcgctcggcgacctgctcgcccatgcctttcccgaccgcatcgccgca
cgccatccgtccgacccgctgcgctaccagctggccaacggccgcagcgcgcgcctgcac
gacaacagcgacctgcgcggcgagccctggctggtgatcagcgagctgcgcttcgaggca
cgcgacgcgctgctgctgcgcgccgcgccggtggacgaggcgcgcctgcgcaccgatttc
ccgcagcgcttccaccagcgcgacgtggtgcgctggaacggcgagcggcgcgcgctggag
gcacggcgcgaatccggcttcgaccgcatcgtgctggacagccgcccggccggcagggtc
gatccggcacaggccgcgcgcgcgctcaccgacgcggtgcgcgaactggggctggacgcg
ctgccatggaccggcgcgctgcgccagtggcgccaccgcgtgcagggactgcgccagtgg
atgccggaactgggcctgcccgacctgtccgacgcggcattgctggacacgctcgacacc
tggctgctgccggctttcgccggcaagacccggctcgacgccctcggcgaaccggagctg
ggcgaagcgctgaaatcgggcatcgactggaacctgcgccagcagatcgaccgccatgcg
ccggtgcggatcagcgtgccgtcgggcatggatcgcgccatcgactacgcgatggacgac
gatggactgactccgcgcccgccggtactggcggtcaagctgcaggagctgttcggcctg
gccgacacgccgcgcatcgccgatggccgcgtgccgctgctgctgcacctgctctcgccc
ggcggcaagccgctgcaggtcaccggcgacctgcgcaacttctgggagaacacctatgcg
gaagtgcggaaggagatgaagggccggtatccccggcatccatggccggacgacccctgg
agcgcaaccgccacgcaccgcgcaaaaccccgcgggacgtga
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