Stenotrophomonas acidaminiphila: AOT14_35960
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Entry
AOT14_35960 CDS
T04107
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sacz
Stenotrophomonas acidaminiphila
Pathway
sacz03420
Nucleotide excision repair
sacz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sacz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOT14_35960 (uvrD)
03430 Mismatch repair
AOT14_35960 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sacz03400
]
AOT14_35960 (uvrD)
Enzymes [BR:
sacz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOT14_35960 (uvrD)
DNA repair and recombination proteins [BR:
sacz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOT14_35960 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AOT14_35960 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALJ29929
UniProt:
A0A0S1B4E4
LinkDB
All DBs
Position
complement(3941469..3943658)
Genome browser
AA seq
729 aa
AA seq
DB search
MDVSHLLDGLNLAQREAVSAAPGHYLILAGAGSGKTRVLTHRIAWLNEVHGVPTHGIFAV
TFTNKAAGEMRQRIDLQLRNGARGMWIGTFHGLAHRLLRLHWADARLPEAFQVMDSDDQL
RLVKRVVQALELDDGKFPAKQIAWWINAQKDEGRRPQHIQPEPHDAWLETMRQAYIEYQA
RCDRAGLVDFAELLLRAHELLRDNPALLAHYRARFGEILVDEFQDTNAIQYAFVRVLAGD
SGHVFVVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTIRLEQNYRSSANILNAANAVIAH
NPDRIGKQLWTDSGDGEPIDLYAAYNEMDEARYLVERARQWVRDGGSYGDIAVLYRSNAQ
SRAFEEALLSEQVPYRVYGGMRFFERAEIKDALAYLRLLTNRNDDAAFERAVNTPARGIG
ERTLDEVRRVARAQSLSLWEAAMLATQGGDLAARARNALAGFLNLVQQIGGETTQMTLAE
RIDHVLVRSALREHWSKESRNTLDSESRSDNLDELVSVASRFVQRDQDEEGAADMSELVA
FLSYASLEAGEGQAQAGEDGVQLMTLHSAKGLEFPLVFLAGLEEGLFPGARSLEESGRLE
EERRLAYVGITRARQKLVLGYAESRRIHGQDNYSLPSRFLREIPRELLHEVRPKVQVSRP
ASLGSSRVSGHAALEAPAIRLGASVSHPKFGEGVVTDYEGSGAHARVQVEFAEAGSKWLV
MAYANLNVL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttcccacctgctcgatgggctgaacctggcccagcgcgaggccgtttccgct
gcccccggccattacctgatccttgccggcgccggttccggcaagacccgcgtgctcacc
caccgcatcgcctggctcaacgaagtgcacggcgtgccgacccacggcatcttcgcggtg
accttcaccaacaaggccgccggcgagatgcgccagcgcatcgacctgcagctgcgcaac
ggtgcgcgcggcatgtggatcggcacgttccacggcctggcccatcgtctgctgcgcctg
cactgggccgatgcccggctgcccgaagcgttccaggtgatggactcggacgaccagctg
cggctggtcaagcgcgtggtgcaggcgctggaactggacgacggcaagttcccggccaag
cagatcgcgtggtggatcaacgcgcagaaggacgaaggccggcgcccgcagcacatccag
cccgagccgcacgatgcctggctggaaaccatgcgccaggcctacatcgagtaccaggcg
cgctgcgaccgcgccgggctggtggatttcgccgaactgctgctgcgcgcgcacgaactg
ctgcgcgacaacccggccctgctggcccactaccgcgcgcgcttcggcgagatcctggtc
gatgagttccaggacaccaatgccatccagtacgccttcgtgcgcgtgctggccggcgac
tcgggccacgtgttcgtggtcggcgacgacgaccaggccatctacggctggcgcggcgcc
aaggtcgagaacgtgcagcgcttcctgaaggatttcccgggcgcgcagaccatccgcctg
gagcagaactaccgctccagcgccaacatcctcaacgccgccaacgcggtcatcgcgcac
aacccggaccgcatcggcaagcagctgtggaccgacagcggcgacggcgagccgatcgac
ctgtatgccgcctacaacgagatggacgaggcgcgctacctggtcgagcgtgcgcggcag
tgggtgcgcgacggcggcagctacggcgacatagccgtgctttaccgcagcaacgcgcag
tcgcgggccttcgaagaggcgctgctgtccgagcaggtgccgtaccgcgtgtacggtggc
atgcgcttcttcgagcgcgccgagatcaaggacgcgctggcctacctgcggctgctgacc
aaccgcaacgacgacgcggcgttcgagcgcgcggtgaatacgccggcgcgcggcatcggc
gagcgcaccctggacgaagtgcggcgcgtcgcgcgcgcgcagtcgctgtcgttgtgggag
gcggcgatgctcgctacccagggcggcgacctcgccgcgcgtgccaggaacgcgctggcc
ggtttcctcaacctggtccagcagatcggcggcgaaaccacgcagatgaccctggccgag
cgcatcgaccacgtgctggtgcgctcggcgctgcgcgaacactggagcaaggagagccgc
aacacgctcgactccgaatcgcgcagcgacaacctcgacgaactggtctcggtggcctcg
cgcttcgtccagcgcgaccaggacgaggagggcgccgccgacatgagcgagctggtggcc
ttcctgtcctacgcctcgctggaggccggcgaaggccaggcccaggccggtgaggacggc
gtgcagctgatgacgctgcattcggccaagggcctggagttcccgctggtgttcctggcc
gggctggaggaagggctgttcccgggcgcgcgctcgctggaggaaagcggccggctggaa
gaagagcgccggctggcctacgtcggcatcacccgcgcccggcagaagctggtgctgggt
tacgccgagtcgcgccgcatccacggccaggacaactacagcctgccgtcgcgcttcctg
cgcgagatcccgcgcgagctgctgcacgaagtgcggcccaaggtgcaggtctcgcgcccg
gcctcgctgggcagcagccgggtgagcggccatgccgcgctggaggcgccggcgatccgc
ctgggtgccagcgtcagccaccccaagttcggcgagggcgtggtcaccgactacgaaggc
agcggcgcgcatgcacgggtgcaggtcgagttcgccgaggccggcagcaagtggctagtg
atggcctacgccaacctgaacgtgctctag
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