Staphylococcus aureus subsp. aureus ED98: SAAV_0746
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Entry
SAAV_0746 CDS
T01124
Name
(GenBank) VacB/RNase II family exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sad
Staphylococcus aureus subsp. aureus ED98
Pathway
sad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAAV_0746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sad03019
]
SAAV_0746
03016 Transfer RNA biogenesis [BR:
sad03016
]
SAAV_0746
Enzymes [BR:
sad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SAAV_0746
Messenger RNA biogenesis [BR:
sad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAAV_0746
Transfer RNA biogenesis [BR:
sad03016
]
Prokaryotic type
tRNA degradation factors
SAAV_0746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
OB_Dis3
Rho_RNA_bind
RNase_II_C_S1
S1_RRP5
HemN_C
Motif
Other DBs
NCBI-ProteinID:
ACY10666
LinkDB
All DBs
Position
799998..802370
Genome browser
AA seq
790 aa
AA seq
DB search
MNLKQSIEEIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQSGLIERTKTDRY
QKKHSSKGHSKLIKGTLSQNKKGFAFLRPEDEDMEDIFIPPTKINRALDGDTVIVEIHQS
KGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAVDG
HKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEAVP
DHIENTEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVTED
SALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPHVDRLTLSCRMEIDASGRVVKHE
IFDSVIHSDYRMTYDAVNQIITEKDPNIREQYKEITPMLDLAQDLSNRLIQMRKRRGEID
FDISEAKVLVNEVGIPTDVQLRQRGEGERLIESFMLIANETVAEHFSKLNVPFIYRVHEQ
PKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAH
YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELA
EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI
ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDR
SQRPARGKTIQAKTRGKSLDKSKSDDKGRKKKGKQRKGKNQRNNDKSGNSKHKPFYKDKS
VKKKARRKKK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatcaatagaagagattattaatcaacctgaatatgaacctatgtca
gtgtcagattttcaagatgcattaggtttaagtagtgccgactcatttagagatttaatt
aaggtgctcgtagaattagaacaatcaggattaattgaacgtacaaaaacagacagatat
caaaaaaagcatagttcaaaaggtcattcaaaattgataaagggaacgttaagtcaaaat
aaaaaaggctttgcattcttaagacctgaagatgaggatatggaagatatatttattccc
ccaacaaaaattaatcgtgccttagatggagatactgtaattgtagaaatacatcaatct
aaaggtgaacataaaggtaaaattgaaggggaagttaagtcgattgagaagcattcagta
actcaagttgttggtacgtatagtgaagctagacatttcggatttgttattccagatgat
aaacgtattatgcaagatattttcattcctaaaggacaaagtttaggtgcagtagatggg
cataaggtacttgttcaaattactaaatatgctgatggttcagataatccagaaggacat
atttctgctattttaggacataaaaatgatcctggcgtagatattttatctattatctat
caacatggcatagaaattgaatttcctgatgaagtgttacaagaagctgaagcagtacct
gatcatattgaaaatactgaaattaaaggccgtcatgatttacgtgatgaattgacaatc
acaattgatggtgctgatgctaaagacttagatgacgcaattagtgttaaaaagttagcg
aacggtaatacgcagttgactgtaagtattgctgatgtcagttattatgtaactgaagat
tcagctttagataaagaagcttatgatagagcgacaagtgtatatcttgttgaccgtgtg
attccgatgattccacatcgattaagcaatggtatttgttcattaaatcctcatgttgat
cgtttaacgttaagctgtcgcatggaaatcgatgctagtggtcgcgttgttaaacatgaa
atttttgatagtgttatacattctgattatcgaatgacgtatgatgcggtaaatcagatt
attactgaaaaggatcctaacattcgcgaacaatataaagaaattacgcctatgttagat
ttagcacaagatttatctaatcgtttgattcaaatgagaaaacgacgtggtgaaatcgat
tttgatattagtgaagcaaaagtattagttaacgaagtcggtataccaacagatgttcaa
ttaagacaacgtggcgagggtgaacgtctaattgaatcatttatgttaattgcaaatgaa
acagttgctgaacattttagtaagttaaatgtaccttttatttaccgagtgcatgagcaa
cctaaatcagatcgcttaagacaattctttgattttattacaaactttggcatcatgatt
aagggcactggcgaagatattcatccaacaacacttcaaaaggttcaagaagaagtagaa
ggtcgacctgaacaaatggtcatttcaacaatgatgttacgttcaatgcaacaagcgcat
tatgatgatgtgaacttgggacattttggcttatcagctgaatattatacgcattttaca
tcaccaattagacgttatcctgatttaacagttcatcgtttaatccgtaagtatttaatt
gagaaatcaatggataacaaagaagtgaagcgttgggaagacaaattgcctgagttagct
gaacatacttctaaacgtgaacgtcgtgctattgaggcagaacgtgatactgatgaattg
aaaaaagcagaatatatgattcaacatattggtgatgaatttgaaggtattgtcagctca
gtagctaacttcggtatgttcattgaattgccaaatacgatagaaggtatggttcatatt
gcgaatatgactgatgattattaccgttttgaagagcgtcaaatggcattaattggtgag
cgtcaagctaaagtatttagaattggtgacacagttaaggttaaagtgacgcatgttgat
gtagatgaacgattaattgattttcaaattgttggaatgcctttacctaaaaatgaccgc
tcacagcgaccagcaagaggtaaaacgattcaagctaaaacgcgtggcaaatctttagat
aaatcgaaatctgatgataagggtcgtaagaaaaaaggtaagcaacgtaaaggtaaaaac
caacgtaataatgataaatcaggtaatagtaagcataagccattttataaagataaaagt
gtgaaaaagaaagcacgtcgtaagaaaaaataa
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