Candidatus Steffania adelgidicola: GFK82_00011
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Entry
GFK82_00011 CDS
T07600
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sade
Candidatus Steffania adelgidicola
Pathway
sade03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sade00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFK82_00011 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sade03019
]
GFK82_00011 (rnr)
03016 Transfer RNA biogenesis [BR:
sade03016
]
GFK82_00011 (rnr)
Enzymes [BR:
sade01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GFK82_00011 (rnr)
Messenger RNA biogenesis [BR:
sade03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GFK82_00011 (rnr)
Transfer RNA biogenesis [BR:
sade03016
]
Prokaryotic type
tRNA degradation factors
GFK82_00011 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
AbiEii
Motif
Other DBs
NCBI-ProteinID:
UDG79516
LinkDB
All DBs
Position
11947..14262
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AA seq
771 aa
AA seq
DB search
MSQDPFLEREAEKYLFPVPSREFILAFLGKREKPVNREELAKELDIFGEDHLEGFRRRLR
AMERDGQLIFTRRQCYALPERLDLLRGTVIGHRDGFGFLRVEGSKDDYYLSAEQMKTTIH
GDVVMAQPQGPERKGRREARIVRVLVPKTSQIVCRFFIDAGSAFGVPDDSRLSFDILIPQ
DATKDARTGYVVVVELTQRPTRRTKAVGKVVEVLGDNMGTDMAVNIALRTHDIPHIWSKE
VDQQVSTLKNEVSEEEKRGRINLCSLPFVTIDGEDARDFDDAIYCEKKRSGGWRLWVAIA
DVSYYVRPNTPLDQEASRRTTSVYFPSQVIPMLPDILSNGLSSLNPKVDRLCMVCEMTIS
MQGRLSSYRFYEAVINSHARLTYSEVWKILQGERELLYTHDTPIIHSLMQLYSMYQILEK
ARVQRGGISFETEEAKFIFNSEQRIERIEPVKRNQAHRLIEECMILANIAAARFVEKSKE
PALYRVHDRPSNEHITSLRTVLHKLGLFLGGGDRPEPKDYVDIMKLISNRPDHEMLTTML
LRSMKQAIYDPENRGHFGLALQAYVHFTSPIRRYPDLILHRSIKYLLAKEKGNINGRQSL
TGGWHADAEEMLKFGQQCSMSERRADEATRDVGDWLKCDFMQDHVSEVFTGIITSVTSFG
FFVRLHELFVDGLVHVSSLDNDYYRYDSIAQRLIGESGGRVYRIGDTVQIRVEAVRMDER
KIDFSLVFSRQQPSCAGKIERQNQKKGIYNRRVRRRHCEKKLACFEPESMF
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccgtttctggaaagagaggcagaaaaatacttatttccggttccaagc
cgagaatttattcttgcttttttgggtaagcgggaaaaaccagttaaccgagaggagtta
gccaaagagttagatatcttcggagaagatcatttggaaggttttcgccgtcgtttgaga
gcgatggagcgtgatggccaattaatttttactcgcaggcagtgctatgcgcttccggaa
cgtttagatcttttgcgaggtaccgttatcggtcaccgtgacggcttcggttttctgcgt
gttgaaggtagtaaagatgactattatttatctgccgaacagatgaaaacaactattcat
ggtgatgttgttatggcgcagcctcaaggtccggaacgtaaaggtcgccgggaggcgcgt
attgttcgggttctggtgccgaaaacaagtcaaatcgtatgtcgatttttcattgatgct
ggtagcgctttcggcgtgccagatgatagccgtcttagttttgacatcttgatcccacag
gacgctacgaaggacgcacgaacgggatatgtcgtagtagtagaactgacccagcgacca
acccgacgcacaaaagctgttggtaaagtagtcgaagtgcttggggataatatgggtact
gatatggcagtcaatatcgctctacgaactcatgatattccccacatctggtcaaaagaa
gtcgatcagcaggtgagtactttaaaaaacgaggtctcagaagaggagaaacgaggacgt
attaatttatgttcattaccgtttgttactattgatggcgaagatgcacgcgattttgat
gatgcgatttattgtgagaaaaaacgaagcggaggttggcgtctatgggtagcgattgct
gacgtaagctattacgtaaggccgaatactcccttagatcaagaagctagtcgccgtact
acttcagtttattttccctcgcaggtgataccgatgctgcctgatattctatcaaacggt
ctctcttcactaaatccaaaagtggataggctatgtatggtctgcgaaatgaccatctct
atgcaaggacgtctttcttcctatagattttatgaagcagtaattaattctcatgctcgc
ctaacatatagtgaagtctggaagattttacagggtgagcgtgaattattgtatactcat
gatacaccgattatccattctttaatgcagttgtatagcatgtatcaaattctggaaaaa
gctagggtgcagcgtggtggtatttcttttgaaaccgaagaagcaaagttcatttttaat
tcagagcagcgtatcgaacgtatcgaaccggtaaagcgaaatcaagctcacaggttgatt
gaagaatgtatgattttagcgaatatcgctgcagctcgcttcgtggaaaaatctaaagag
ccggcgctttatcgcgtgcatgatcgtccaagtaatgagcatattacatctttacgcaca
gtattacataaactgggtcttttcttgggtggcggggataggcctgagcctaaagattat
gtagatataatgaaattaatttctaatcggcccgatcacgaaatgctcaccaccatgtta
ctgcgatcaatgaagcaggctatttatgatcctgaaaaccgtgggcattttggtctggca
ttacaggcgtatgtccactttacttctcctatccgtcgttatccagatcttatattgcat
cgaagcatcaaatatcttcttgcgaaagaaaaaggtaatatcaatgggcgtcaatcccta
actggaggttggcatgcagatgcagaagaaatgctaaagtttggtcagcaatgttccatg
agtgaacgtcgcgccgatgaagcaacccgtgatgtaggggactggttaaagtgtgatttt
atgcaggatcacgtcagcgaagtatttactggaattattacaagcgtaaccagttttggt
ttttttgtgcgtctccatgaactatttgttgatggtttggttcatgtatcatctctagat
aacgactactatcgttacgatagtattgcgcagcgtttaataggggaatctggtgggaga
gtgtatcgtatcggtgatacagtacagatccgtgttgaagcagtacgtatggatgaacgc
aaaatcgatttttcgttagtttttagtcgtcaacagccttcctgtgccggaaaaattgaa
cggcagaatcaaaaaaaaggcatctataacagaagagtacggcgtcgtcactgtgagaaa
aagcttgcttgttttgaaccggagagtatgttctga
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