Candidatus Steffania adelgidicola: GFK82_00085
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Entry
GFK82_00085 CDS
T07600
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sade
Candidatus Steffania adelgidicola
Pathway
sade03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sade00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFK82_00085 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sade03021
]
GFK82_00085 (rho)
03019 Messenger RNA biogenesis [BR:
sade03019
]
GFK82_00085 (rho)
Transcription machinery [BR:
sade03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GFK82_00085 (rho)
Messenger RNA biogenesis [BR:
sade03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GFK82_00085 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA_25
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
UDG79574
LinkDB
All DBs
Position
149888..151147
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELVILGENIGLESLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLYANSRLHMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMHRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttaccgaactaaaaaatacgccggtttcagagttagtaattcttggcgagaat
attgggctggaaagcttagcccgcatgcgtaaacaagatatcatcttcgctatccttaaa
cagcatgctaaaagtggcgaggatatcttcggcgatggtgtattggaaattttgcaggac
ggattcggttttctccgctccagtgatagttcctaccttgctggtcctgatgatatctac
gtttctcccagccaaattcgtcgtttcaatttacgtactggcgatactatttctggcaag
attcgtccgccgaaagaaggcgagcgttactttgctttgctgaaggtaaatgaagttaat
tatgacaagccagaaaacgccaggaacaaaattttatttgaaaatcttactccgttatat
gctaattcgcgtttacacatggagcgtggtaatggctctaccgaagatttaactgcacgc
gttttggatctggcctctccgattggtcgtgggcagcgggggttaattgtggcaccgccg
aaagccggtaaaactatgcttctgcaaaatattgctcaaagtattgcgtataatcatccg
gattgtgtgctgatggtactactgattgatgagcgtcctgaggaagtgactgaaatgcat
cgtttagtaaaaggtgaagttattgcttcaacttttgatgagccagcgtctcgtcacgtt
caggttgcagaaatggtaatagaaaaagctaagcggctagtagaacataagaaggacgtg
attattttgcttgattctattactcgtttagcacgcgcctacaatactgttgttccggct
tctggtaaggtattgactggtggtgtagatgctaatgcgctgcatcggccgaagcgtttc
ttcggtgccgcccgtaatatggaggaaggtggtagcttgaccatcattgctactgcatta
attgatactggctcaaagatggatgaagtaatttacgaagagtttaaaggtacaggcaat
atggaattgcacttatcacgaaaaattgccgagaaacgtgtttttccggcaattgattat
aaccgctcgggtacccgtaaagaagaattactaactactcaagaagagctgcaaaaaatg
tggattttgcgtaaaattattcacccgatgggtgaaattgatgcaatggaatttttgata
aataagttggccatgaccaaaaccaacgatgatttttttgatatgatgaaacgttcgtaa
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