Candidatus Steffania adelgidicola: GFK82_00133
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Entry
GFK82_00133 CDS
T07600
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sade
Candidatus Steffania adelgidicola
Pathway
sade03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sade00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GFK82_00133 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sade03400
]
GFK82_00133 (mfd)
Enzymes [BR:
sade01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GFK82_00133 (mfd)
DNA repair and recombination proteins [BR:
sade03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GFK82_00133 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
MNE1
dATP-dGTP_PPHyd
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UDG79614
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All DBs
Position
complement(221521..224973)
Genome browser
AA seq
1150 aa
AA seq
DB search
MLERDCYTLPNQANQKLVLGELEGAACSLECAAIVNRHPGLVLLIATDMKNVRRLHNEIQ
HLTPHPVLTLPGWETFPYDVLSPHQKIVSKRITALYWLPTLKRGIIIMSVNTLMQRVCPH
SFLHRHTRLMTKNQHLSSDILRNELEQAGYHSVFQVMQHGEFSIRCALLDLYPMGSDNPY
RVDFTNEKIHDIRIFDIDTQRTRQEVSSISLMPAHEFPTDKIAIERFRRQWREQFDVRRD
AEHLYQQVSNGNLPAGIEYWQPLFFNEPLVSLFRYLPMTTLILNTGELEADAVHFWDDTW
MRFKSRRLDPMRPLLPPESLWLEVDTLVRALKKYPRVQLSTKTLLENSNQHNMNCRTLPN
LLIDAKNKAPMEKLCRFYKQLDSSVIFLVENQSRLEILSKLLARINILPKQIYRLEDSVE
RGAYFIIGASEHGFIDIRRNRVVICEGDLMKERGGYHCQDTHYTTKNGVLIRNLTDLHEG
QVVVHLEHGIGRYAGMTTLEISGIKGEYLILIYADNDKLYIPVSSLHLITHYADATSKHA
PLHKLGGGVWAKTRKKTAECVRDIAAELLDIYSQRADKSGFPFQYNQEHYQIFCEGFPFK
LTTDQAQAINAVVQDMCQPIAMDRLVCGDIGFGKTEVAIRAAFLAIENQKQVAILVPTTL
LAQQHFDNFCDRFNNLPVCIEMISRFRSTQDQARVLKQTAKGKVDILIGTHKLLQNDVKW
HDLGLLIVDEEHRFGVRHKEFIRAMRANVDILTLTATPIPRTLHMAMCGMRDLSIIATPP
ARRLAVKTFVREYDAVVIREGILREILRGGQVYYLHNDVRNIEKVAYRLETLVPEARIAI
AHGQMRERDLERVMRDFYHHHFNVLVCTTIIETGIDIANANTIIIERADHFGLAQLHQLR
GRVGRSHQQAYCYLLTPALNILSQEAHKRLEVIKSLEDLGAGFTLATHDLEIRGAGELLG
EVQSGQIETVGVSLYMALLEKALDALKAGREPSLADLRNQLSEVDLRISTIFPEEYIPDV
NTRLLLYKRITNTRNDRDIQDLKVELIDRFGLLPESVYYLLAITSLRLRATNLGIQRIEG
GNKGGFIEFSESHRIDPTYLIDLLQREPETYRLESQTRLRFICNLSNNKTRLNYVDKLLG
GLEQNILTTV
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgttagaacgagattgttataccttaccaaaccaagctaatcaaaaactagttttgggt
gaactggaaggcgccgcctgttccctagagtgcgccgcgatcgttaatcgtcacccagga
ctggtgttgctcatcgctacagatatgaaaaacgtccgtcgattacataatgagattcaa
catctcacgcctcatcccgtattaactctgcccggttgggaaacgttcccttacgatgtt
ctgtcgcctcatcagaaaattgtttcaaaaagaatcaccgcactatactggcttccgaca
cttaaacgcggcattatcatcatgtctgtaaacactctaatgcaacgagtgtgcccccat
tcttttttacatcgacatacacgattaatgacaaaaaatcagcacttatcaagtgatata
ttacgaaatgaactagaacaagccggttatcacagtgtctttcaagtgatgcagcacggt
gaattttctatccgatgtgcattgctggatctctatcccatgggcagtgacaatccttac
cgtgtcgattttactaatgaaaaaattcatgatattcgtatctttgatatagatacacaa
cgcacacgacaagaagtttcttctattagtctgatgccagctcatgaatttccaaccgat
aaaatcgcgatagaacggtttcgccgtcagtggcgagaacagtttgatgtacgccgcgac
gctgaacatctttatcagcaagtaagcaacggtaacctcccggcaggaattgaatactgg
caaccattatttttcaacgaacccctggtttcactgttccgatatctaccgatgacgaca
ctgatactcaacaccggagagcttgaggctgacgccgttcatttctgggatgatacctgg
atgcgatttaaaagtagacgtctagatccaatgcgcccacttctaccacccgaaagtcta
tggctagaagtggataccctcgtcagagcacttaaaaagtatccacgcgttcagcttagc
acgaaaacactattggaaaactctaatcagcataatatgaattgtcgaacgctaccgaat
ttattaatagatgcaaaaaacaaagctcccatggaaaaactatgccggttttataaacag
ttagacagttcagtgatcttcttggtagaaaaccaaagccgattagaaatccttagtaaa
cttcttgctaggataaatatcctgcccaaacaaatataccgtcttgaagattctgttgaa
cgaggtgcttattttattatcggtgctagcgaacacggttttatcgatatacgacgaaat
cgagttgtaatttgcgaaggcgatctgatgaaagaacgaggtggttaccattgccaagat
actcactacaccaccaagaatggtgtcttaatccgcaatctaacagaccttcatgaaggt
caggtagtagtacatctagagcatggaattggtcgctatgctggcatgacgacactagaa
atcagcggcatcaaaggtgagtatttaatactaatatatgccgataacgataaactctat
atccccgtttcttccctacatcttatcacccactacgcagacgctacctctaaacatgcg
ccactgcataaactgggcgggggcgtctgggcaaagacccgaaaaaaaacagctgagtgt
gttcgtgacatagcagcagagcttcttgatatttatagtcagcgtgcagataaaagtggc
tttcccttccaatataaccaggaacattatcaaatattttgcgaaggttttccgtttaaa
ctcacaacagatcaagctcaagcgatcaacgcagtagtacaagacatgtgtcaacctata
gccatggatcgtttagtgtgcggcgatatcggattcggtaaaacagaagttgcaatacgc
gccgcttttctagctattgaaaaccagaagcaggtagctatcttagtgcccactaccctg
cttgcacaacagcatttcgataatttttgtgacagatttaataacttgccagtgtgtatt
gaaatgatttcgcgctttcgctctacccaggatcaggctcgggtactgaaacaaactgct
aaaggtaaagtggatatactgattggtactcataaattactgcaaaacgatgtcaaatgg
catgatttaggtcttcttattgtagatgaggaacaccgcttcggcgtacgtcataaagag
tttattagagcgatgcgtgccaatgtcgatattctgactttgacggccacgcctatacca
cgtacgctccatatggcaatgtgtggaatgcgcgatctatcgattatagctaccccacca
gcacgccgattagcggtaaaaacatttgtgcgcgaatatgatgcagtagtgatacgtgaa
ggtatcctacgcgaaatactgcgcggcggccaagtttattatcttcataatgatgtgagg
aatattgaaaaagttgcctaccgcctagaaactctagtgccagaggcacgcatcgccatc
gcgcacggtcaaatgcgtgagcgcgatttagaaagagtcatgagagatttttatcatcat
cactttaatgtacttgtatgtactacaatcatcgaaacaggtatcgacatcgctaacgcc
aacaccattataattgagagggcagatcatttcggattagcgcagctccatcaacttcgc
ggacgtgttggccgttcacatcagcaagcctattgctatctgctaacaccagcgctaaac
attttaagccaggaagcacataagcgcttagaggtaattaaatcactggaagatctagga
gccggatttacgctagcaacacatgatcttgaaatccgcggcgctggagaattattggga
gaagttcaaagtggtcaaatagaaacagttggcgtgtccctctatatggcactgctagaa
aaagcgttagatgctctcaaggcaggccgggagccatctttagctgatctacgaaaccaa
ctcagtgaggttgatctccgaatatctacaatcttccccgaagagtatattccggatgtt
aacacccgtctattactatataaacggattactaacacccgtaacgaccgtgatattcaa
gacctcaaagttgagcttatcgatcgttttggtctactacctgaatcggtatattattta
ctggcgataaccagtcttagactacgggccacaaacctagggatccagcgtatcgagggg
ggaaataaagggggctttatagaatttagcgaaagtcatcgtattgacccaacttatctt
atcgatttgctacagagagaaccagagacttatcgcttagagagtcagactcgattaaga
tttatctgcaatctgtcgaataataaaacacgcctaaactatgtcgacaaattattgggg
ggactagagcaaaatatattaacaacagtataa
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