Candidatus Steffania adelgidicola: GFK82_00215
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Entry
GFK82_00215 CDS
T07600
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sade
Candidatus Steffania adelgidicola
Brite
KEGG Orthology (KO) [BR:
sade00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sade03016
]
GFK82_00215 (rnb)
Enzymes [BR:
sade01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GFK82_00215 (rnb)
Transfer RNA biogenesis [BR:
sade03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GFK82_00215 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
UDG79687
LinkDB
All DBs
Position
complement(364824..366758)
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AA seq
644 aa
AA seq
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MLQDNPLLAQLKQQLHSQTPRVEGIVKGTEKKFGFLEIDSQTSYFIPPPFMKNVMHGDKI
TAALHTEKDREIAEPEKLIQPFLTRFVGQVQVKDNLVAIVPDHPLINDVILIQTQPPTCR
TLQTGDWVIAEMRQHPLKGARRFYANITGFITTSNDHLAPWWVTLARYNLDRTVPNMPET
VDLLEDGYIRNDLTSLDFITIDNASTEDMDDAIHLENRPDGSWIMTIAIADPTSRVPAGS
PLDRIARERAFTNYLPGFNIPMLPRTLSDDLCALRANQRRPALSCRVTIYQDGTLANDAC
FFLSWVESKAKLIYDNVSDWLENTGVWKPENDAITHQIRSLYHLFQVRSAWRHRHALLLR
DRPNYRFVLDERGNVDDIILEPRRIANRMIEEAMITANVCAAHILRDNLGYGLYNVHNGF
DPLLVEQAVTFLRKHCIDVEPTELLTLEGFCALRRRLDSLPSTYLESRMRRFQTFAEIST
VPGPHFGLGLVAYATWTSPIRKYSDMLNHRLLKAVIGIGEAEQPAKEITLHLTERRRQHR
LAERDVESWLYARFLKPQAGSNNRFLAEVIDISRNGMRVHLLDNGAIAFIPGSFIHNIRN
ELFCSQEIGTIQVKGEERYRQGDIINVTIEEVRIRNRSIIVRPI
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaagataatccgctgcttgcacagctaaaacagcaacttcattctcagacacca
cgtgttgaaggtatagtaaaaggcactgagaaaaaatttggattcctcgaaattgattcc
cagacaagttattttattccaccgccttttatgaaaaacgtgatgcacggcgataaaatc
actgccgcgttacatacagagaaagatcgtgagattgcggaaccggaaaagcttatccag
ccattcctgacccgttttgtaggtcaagtacaggttaaagataacctggttgctattgtt
ccggatcatcctctaattaatgatgttattttgatacaaacacaaccccctacctgtcgg
acccttcaaaccggcgattgggttattgcagaaatgcgccagcacccattaaagggtgct
cgccgattttatgcaaatatcaccggattcattacaacttccaatgaccacttggcacca
tggtgggtaactcttgcccgatataatctcgatcgtactgtgcctaatatgccagaaaca
gtcgatcttttggaagatggatacatacgcaacgatcttacctcgcttgattttatcact
atcgataatgccagcactgaagatatggacgacgctattcatctagaaaacagaccagac
ggttcttggattatgactattgctatcgcggatccaacttctcgcgtaccagccggtagc
ccgctagatcgtattgctcgtgaacgcgcgtttactaattacctcccgggttttaatatt
cccatgctaccacgtacgctatctgacgatctatgcgctttacgcgccaatcaacgacga
cccgccctatcgtgtcgtgtcacaatataccaagacggtacgcttgccaatgacgcttgc
tttttcctttcttgggtcgaatctaaagcaaagctaatctatgacaacgtttcggactgg
ctagaaaataccggcgtttggaaaccggaaaacgacgctattacccatcagattcgatca
ctatatcatctttttcaagtccgcagcgcctggcgtcaccgtcacgcgctgctcttaaga
gatcgccctaattatcgttttgtactagatgagaggggtaatgtagatgatattattctc
gaacctcgacgtattgccaaccgcatgattgaggaggcgatgattactgccaacgtctgc
gccgcacacatattacgtgataacttgggctatggattatataacgtacataacggtttt
gacccacttctagtagaacaagcagtgactttcttgcgaaagcattgtattgatgttgaa
cctactgaactacttaccttagaaggattttgtgcgctacgccgtcgactggattctctc
ccctccacttatctagagagtcgtatgcgccgttttcaaaccttcgccgaaatcagtact
gtgccaggtccccattttgggctaggactagttgcatatgcaacttggacttctcctatc
cgtaaatacagtgatatgcttaatcaccgcttattaaaagcggtaattggcattggtgaa
gcagagcagccagctaaagagataacacttcatctaacggaacgccggcgacaacatcgc
ctagcagaacgggatgtagagtcttggctttatgctcgttttcttaaaccgcaagccggt
agtaataaccgttttttagcggaagtaatcgatatctcaagaaacggcatgcgagtacat
ttactagataatggagcaatagcttttatccctggctcttttattcataacatacgtaat
gaattattttgtagccaggaaatcggtactattcaggttaagggggaagaacgctaccgg
caaggtgatattattaatgtcaccattgaagaagttcgaattcgaaatcgctctattatc
gtccgcccaatctaa
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