Candidatus Steffania adelgidicola: GFK82_00342
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Entry
GFK82_00342 CDS
T07600
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sade
Candidatus Steffania adelgidicola
Pathway
sade03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sade00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFK82_00342 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sade03019
]
GFK82_00342 (pnp)
03016 Transfer RNA biogenesis [BR:
sade03016
]
GFK82_00342 (pnp)
Enzymes [BR:
sade01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GFK82_00342 (pnp)
Messenger RNA biogenesis [BR:
sade03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GFK82_00342 (pnp)
Transfer RNA biogenesis [BR:
sade03016
]
Prokaryotic type
tRNA degradation factors
GFK82_00342 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_2
KH_SLS1_2
KH_2
S1_RRP5
aRib
Motif
Other DBs
NCBI-ProteinID:
UDG79804
LinkDB
All DBs
Position
555538..557652
Genome browser
AA seq
704 aa
AA seq
DB search
MLNPIVTKFQYGQHIVTMETGMIARQATSAVMVGMDDTAVFVTVVGVKHPKPGQSFFPLI
VNYQERSYAAGRFPGGFFRREGRPSEVETLIARLIDRPIRPLFPKGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAAMSLSGIPFHGPIGAARVGYINDRYVLNPTQSELATSRLDLVVA
GTANAVLMVESEAKMLSEDQMLGAVLYGHEQQQVVIENINHLVAAVGKPKWQWQAPALNI
KLQAKIDELAKSRLTAAYQLTDKQERHSVIDAIKIDVVKVLMGLDATLEEGEIRDILGTL
EKNIVRSRIWLGQPRIDGREKDMIRSLDIRTGVLPRTHGSSLFTRGETQALVTATLGTER
DAQNIDELTGERTDRFLLHYNFPPYCVGETGLVTSPKRREIGHGRLAKRAILAVMPNARE
FPYTVRIVSEITESNGSSSMATVCGASLALMDAGVPIKTAVAGIAMGLVKEGDNFVVLSD
ILADEDHLGDMDFKVAGSLEGITALQMDIKIEGITREIMRIALIQAQGARIHILSVMGRA
ISSPRSDISEFAPRIHMIKISPDKIKDLIGKGGSVIRALTEETGTTIEIEDDGTLRVAAI
DGDKAHHAIRRIQEITAEIEVGHIYNGKVTRIVDFGAFVAIGGGKEGLVHISQISDKRVE
KVIDYLSVKQEVLVKVLEVDRQGRVRLSIKEATAYSQAERVPKQ
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaatccgattgttaccaagtttcagtatggtcaacatattgtaacgatggaaact
ggtatgatagctcgtcaagcaacgtccgcagtcatggtgggcatggatgacacagcagta
tttgtaacagttgtgggtgttaaacatcccaaaccaggacagagtttttttccactgatt
gttaactatcaggaaaggagttacgcggcaggccgttttccaggtggattttttcgccga
gaaggtcgtccaagcgaagttgaaacactgattgcacgccttatcgaccgtccaattcgt
ccgctgttcccgaaaggtttcgtaaatgaagtgcaggtaatcgctactgtggtatcggtt
aatccacaagtgaatccggatatcgtagcaatgattggtgcttccgcagcgatgagccta
tccggcatcccatttcacggtcctatcggcgcagcacgcgttggctatatcaatgatcga
tatgtactcaatccgacacaatcagaattagcaacaagccgcctagatttagtggttgca
ggtacagctaatgccgttttgatggtggaatccgaagcgaagatgttgagtgaagatcaa
atgttaggtgcggtgctgtacggtcatgagcagcagcaagtagtgatagagaatattaat
catctagtggctgcagtgggcaagcctaagtggcaatggcaagcgccggcgcttaacatt
aaattgcaagcaaaaattgacgaattagcaaaatctcgtttgactgccgcttaccaactg
actgataagcaagagcgtcattctgttattgatgctattaagattgacgttgtaaaggta
cttatgggcctagatgcaacgttagaggaaggtgaaattagggatattctaggtacattg
gaaaaaaatatagtacgtagtcgtatatggctcggccaaccacgtattgatggtcgcgaa
aaagatatgattcgcagtttagacattcgcaccggtgtattaccgcgtacccatggttca
tcactgtttactcgtggtgaaactcaggccctggttaccgccactctcggtactgaacgc
gatgcgcaaaatattgatgaattgacaggtgaacgaacagaccgtttcttactacactat
aatttccctccatattgcgttggagaaactggcctggtgacttctccgaagcgacgtgaa
atcggccacggacgtctagcaaaacgcgctatcctagcggtgatgccaaacgctcgcgaa
tttccatatacggtccgtatagtgtcagaaatcactgaatcgaatggctcttcctctatg
gctactgtatgcggtgcttccttggcactaatggatgctggagtacccatcaagacagct
gttgccggtatcgcgatgggcttggtaaaagaaggagataactttgtagtattatcagat
atcctggctgatgaagatcatctgggagatatggattttaaagttgccggcagccttgaa
ggtatcactgcgcttcaaatggatattaaaatcgaaggtattaccagagaaatcatgagg
atagcattaatacaggcacagggtgcgcgcattcatattcttagcgtgatgggacgggca
attagttcaccgcgtagcgatatttccgaattcgcaccgcgcattcatatgataaaaata
agtcctgataagattaaagatcttattggtaaagggggctctgttatccgtgctctgact
gaggaaaccggtacgacaatcgagatcgaagatgacggcaccctgagagtggcggcaatt
gacggcgataaggcccatcatgctattcgccgtattcaagagatcactgcagaaatcgaa
gtaggtcatatttataatggaaaagttactcgtatcgtggattttggtgcctttgtggcc
attgggggtggtaaggaagggttggtgcatatttctcagatttccgataagcgcgtggag
aaagttattgattatctatcggttaagcaagaagtactcgtcaaagttcttgaagtagac
cgtcagggtcgcgtgcgtctaagtataaaagaagccaccgcctacagccaggctgaaagg
gtacctaaacaataa
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