Candidatus Steffania adelgidicola: GFK82_00344
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Entry
GFK82_00344 CDS
T07600
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sade
Candidatus Steffania adelgidicola
Pathway
sade03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sade00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFK82_00344 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sade03019
]
GFK82_00344 (deaD)
03009 Ribosome biogenesis [BR:
sade03009
]
GFK82_00344 (deaD)
Enzymes [BR:
sade01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GFK82_00344 (deaD)
Messenger RNA biogenesis [BR:
sade03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GFK82_00344 (deaD)
Ribosome biogenesis [BR:
sade03009
]
Prokaryotic type
rRNA helicases
GFK82_00344 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ThylakoidFormat
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
UDG79806
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All DBs
Position
558639..560426
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AA seq
595 aa
AA seq
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MSKVKTYFSDLGLKDSILNALTDLGYETPSPIQSACIPPLLAGYDVLGMAQTGSGKTAAF
ALPLLHNVNSALSAPQVLVLAPTRELAVQVGEACSHFSKHMKGVNVIALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSHLSGLVLDEADEMLRMGFIEDVENILDQIPAK
HQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVRGMRKNEALLRFL
ETEDFDAAIIFVRTKNATLEVAETLERSGYNSAALNGDMNQSLREQTLDRLKDGRLDILI
ATDVAARGLDVNRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERIMKLTIQEVALPTAEVLSTRRLAKFSAKVKSQLESKDLDMYRALLGKLQPVEELSMET
LAAGLLKIAQGEHPLILPPDLIIERRPSRELHEREERRNTGEKSQRRERRDMGEMNLYRI
EVGRADGVEVRHIVGVIANEGDISSRNIGNIKLFSSHSTIELPKSMPEDMLSHFTRTRIL
NKPINIQFISESQSRGGRGNYSGERRESPRRTFSERRHDNSKVTPVGRRRLGDDI
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagtaaaaacttatttttctgatttgggtttaaaggattccattcttaatgca
ctgactgatctcggttatgaaacaccatcacctattcagtccgcctgtattcctcctttg
ttggcgggctatgacgtactgggtatggctcagaccggtagtggaaaaactgcggctttt
gctttaccgttattacataatgtcaattctgcattatccgcaccacaggttctggtttta
gcgccgactcgcgaattagcggtacaggtcggggaggcgtgttcccatttttccaagcat
atgaaaggtgttaacgtaatcgctctgtacggcggtcagcgttatgatgtgcaattacgc
gcgctccgacaagggccgcaagttgtagttggtaccccgggtagattacttgatcattta
aaacgcggtacgctggatttgtcacatttgagcggactagtactggatgaagctgatgag
atgctacgcatgggctttattgaagacgtagaaaatattctggaccagataccagccaaa
catcaaactgctttattttccgccaccatgccggaagctattcgccggattacgcgtcgc
ttcatgaatgagcctcaggaagtacgaattcagtctagcgttaccactcgtccagatatt
agtcagtcctactggacagtgcgtggaatgaggaaaaatgaagcgttattgcgttttctg
gagacggaagatttcgatgctgctattatcttcgtacgtaccaaaaatgcgacgctagaa
gttgctgaaacattagagcgtagcggttataacagcgcggctcttaatggggacatgaac
cagtcattgcgtgagcaaacattagatcgtttaaaagatggtcgtctagatattctaatc
gctaccgatgtagctgctcgtggtctagatgttaatcgtattagtctggttgttaactac
gatatcccaatggattctgaatcttatgtgcatcgtattggccgtaccggccgggctggt
cgagcaggccgagccctactgtttgtagaaaatcgcgaacgtcgattgcttcgaaacatt
gaacgcattatgaaactgactatccaagaagtagcactgccgactgctgaagtgttgagc
acaaggcgtctagccaagttctctgctaaggtgaaaagtcaattagaaagtaaggatctc
gatatgtatcgagcattactaggtaagctacagccggtagaggaattgagtatggaaaca
cttgcagcagggttgttgaaaatagctcagggcgaacatccgctaattcttccgccagat
ctaatcatcgaacgtcgtccaagtcgcgagttgcacgagcgtgaggagcggcgtaatact
ggagagaaatcgcagcgtcgggaacgtagagatatgggtgaaatgaatctttatcgtatt
gaagtggggcgtgcggatggagttgaagtgcgtcatattgttggtgtcatcgctaatgaa
ggggacatcagtagtcggaatatcgggaatattaaattgttttcttctcattcgacgatt
gagttaccaaaaagtatgcctgaagatatgctgtctcatttcactcgtacgcgtattcta
aacaagccgataaatatacagtttattagtgaatctcaatcgcgaggtggtcgcggaaat
tacagcggtgaacgtcgtgaaagtcctcgtcgtacctttagtgaacgtcgtcacgataat
agtaaagtaacaccagttggtcgccgtcgtcttggtgatgatatctga
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