Candidatus Steffania adelgidicola: GFK82_00734
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Entry
GFK82_00734 CDS
T07600
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sade
Candidatus Steffania adelgidicola
Pathway
sade03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sade00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GFK82_00734 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sade03021
]
GFK82_00734 (rpoC)
03400 DNA repair and recombination proteins [BR:
sade03400
]
GFK82_00734 (rpoC)
Enzymes [BR:
sade01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GFK82_00734 (rpoC)
Transcription machinery [BR:
sade03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GFK82_00734 (rpoC)
DNA repair and recombination proteins [BR:
sade03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GFK82_00734 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UDG80161
LinkDB
All DBs
Position
1217813..1222039
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKSQTKTEEFDAIKIALASPDMIRSWSFGEVRKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGVLLDMPLRDIERVLYFESYVVVESGMTTLHCRQILTEEQYLDAVEEFGDEFDAKM
GAEAIQNLLKNMDLDQECKQLREELEATNSETKRKKLTKRIKLLEAFIQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVYALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNGKGEGMILTGPKEAERIYRAE
IAELHARVKVRITEYEKCDNGELVKRTHIVDTTIGRAILWMIVPTGLPFSLVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFTYAARSGSSVGIDDMVIPIKKAEIIDEAESE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMNNLSTETVINRNGIEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFSGIVMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGIKDVLVFRNTLLNEQWCDILEENSIDSVKVRSVVTCETDFGVCANCYG
RDLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIRL
SSAKFVINSSSKLVITSRNTELKVIDEFGRTKESYKVPYGAVMAKGNGEQIISGEIVANW
DPHTMPVITEVDGFVRLTDMIEGQSITRQTDELTGLSSIVVLDTAERTGVGKDLRPALRI
VDANINDVLLPGTDIPAQYFLPGKTIVQLEDGAKITGGDTLARLPQETSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKDTKGKRRLVISPVDGKDTYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQEVYRLQGVKINDKHIEVIIRQM
LRKATITSSSRLDFLEGEQAEYSRIKTANRQSLNNGKMQMSYIRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAHHQELARYRQRNPGVI
AASPPITADEASANLSELLNAGLGRNNK
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaaatttctgaaatcacaaactaagactgaagaatttgatgcaatt
aagattgcgctagcctcaccagatatgatccgttcctggtctttcggtgaagtgagaaaa
ccggaaactattaactatcgtacatttaaaccagagcgtgacggtctattctgcgcccgt
atttttggaccagtaaaagactatgaatgcctctgcggtaaatataaacgtttaaaacat
cgcggcgtaatctgtgaaaaatgtggtgttgaagtaacccagactaaagtgcgtcgtgaa
cgcatgggtcatatcgagctagcctcacccaccgcacatatttggtttttaaaatctctt
ccatcccgtattggtgtgttattagatatgccacttcgcgacatcgaacgagttttgtat
tttgaatcctatgtcgtagtggaaagtggcatgaccacacttcactgccgtcaaatttta
acagaagagcagtatttagacgcagtagaagagtttggtgacgaattcgacgccaagatg
ggcgctgaagccatacaaaatctattgaaaaatatggacttagatcaggaatgtaaacag
ctacgcgaagaactagaagcaaccaactccgaaaccaagcgaaaaaaactgactaaacgc
attaaattgttagaagctttcattcagtccggtaacaaacctgagtggatgattctgact
gtgctaccagtgctaccaccagatctgcgtccgcttgtaccgctggatggggggcgtttt
gcaacctcagatctaaacgatctgtatcgccgggtcattaaccgtaataatcgcttgaaa
cgactgctagatctagccgcaccggatattattgtacgcaatgaaaaacgcatgttacaa
gaatcagtctacgctctcttggataacggccgacggggccgcgccattaccggttctaat
aaacgtccgctaaaatcattggctgatatgattaaaggtaaacaaggtcgattccgtcag
aatttgctaggtaagcgtgttgactactccggccggtcggtaattaccgtcggaccatat
ctccgcttacatcaatgcggtttgcccaagaaaatggcgctagagttatttaaacctttc
atttatggaaaactcgaattacgtggccttgccactacgattaaagctgcaaaaaaaatg
gtagaacgagaagaagcagtagtctgggatatactggacgaggttatccgtgaacaccca
gttatgctaaaccgtgcaccaacactgcatcgtctaggtattcaagcatttgaaccagta
ctgattgaaggaaaagccattcaacttcaccctcttgtgtgtgcggcatataacgctgac
ttcgatggtgatcaaatggcagtacatgtcccgctgactctagaagctcaattagaagcg
cgtgcgctaatgatgtctactaacaacattttatctcccgctaatggcgaacccatcatc
gtaccttctcaggatgtagtactcggtttatattacatgacccgagatcgcgttaatggt
aaaggtgaggggatgattctaaccgggccaaaagaagctgaacgcatctaccgcgccgag
atagcagagctgcatgcacgcgttaaagtacgcattacagaatatgaaaaatgcgataac
ggcgaattagtgaagaggactcatatagtagatactactatcggccgggctatcctatgg
atgattgttccaacaggactaccgttttcattagtaaatcaagcactcggtaaaaaagcc
atctccaagatgcttaatacctgctatcgagtactaggtttgaagcccaccgtcattttc
gccgatcagataatgtacactggattcacttacgctgcccgttctggctcatcagtgggc
atcgatgatatggtgatcccgataaaaaaagccgaaataatcgatgaagctgaatctgaa
gtagctgaaattcaagagcaattccagtctggtctagtcacagccggcgaacgttataat
aaagtaatagatatctgggctgcggctaacgaacgagtcgccaaagccatgatgaataat
ctatctactgaaacggtgattaaccgaaatggaatagaagaacggcaagtatcatttaat
agcatttttatgatggcagattcgggtgcccgtggttcagcagcacaaattcgccaactg
gccggtatgcgtggcctgatggcaaagcctgatggatccatcatcgaaacaccaattaca
gcaaactttcgtgaaggtttgaatgtactccagtactttatctctacccatggcgcacgt
aaaggtttagccgataccgcactaaaaacggcaaactcaggttacctgacacgtcgttta
gtcgacgtggcgcaagatctggttgtaaccgaggatgactgtggtaccttttcgggtatc
gtaatgacgccggttatcgaaggtggcgatgttaaagaaccgttgcgcgaacgcgttctg
ggccgcgtcacagcggaagacgtcctaaaacctggtatcaaagatgttttggtcttccgt
aatactctattaaatgaacagtggtgtgatattctagaagaaaattctatagatagcgtt
aaggtgcgttctgtcgttacctgtgagactgattttggtgtgtgtgctaactgctacggt
cgagatctggcacgggggcatttagtaaataaaggcgaagctatcggggtaatcgcagca
caatccatcggcgaacctggtacccagctgaccatgcgcactttccatatcggtggcgct
gcatctcgtgctgctgcggaatcaagcatccaagtcaaaaacaaagggactattcgtctc
agtagcgccaaatttgtcattaatagcagtagtaaactggtaattacttcacgcaatact
gaacttaaggtcattgatgaatttggccgtacaaaagaaagttataaagtaccttatggt
gctgtcatggctaaagggaacggtgagcaaatcataagcggggaaatcgttgccaattgg
gatccacataccatgccagttatcaccgaagtcgacggttttgtacgtctcactgatatg
atcgagggacagagtattactagacagactgatgaattaaccggtttatcttctatcgtg
gtactagataccgctgaacgtactggcgtgggtaaagatcttcggccagcactacgaatt
gtagatgctaatattaacgatgttctactgccgggtactgatataccagcacaatatttt
ttaccagggaaaacgatcgtacaactagaagacggtgcaaaaattaccggtggtgacacg
ctagctcgcctaccacaagagaccagtggcacgaaagatattaccgggggtctaccacgt
gttgctgatctttttgaagcacgccgtccaaaagaaccggcgattctagctgagattagt
ggtatcatttcttttggtaaagacactaaagggaagcgtcgcctagttatctctccggta
gacggcaaagacacctatgaagagatgatcccgaaatggcgtcagcttaacgtatttgaa
ggtgagcgagtagaacgaggtgatgtgatttcagatggtccagaatcaccacacgacatt
ttgcgtttacgtggcgtacatgctgtaactcgatatattgtcaacgaagtccaggaggtt
taccgcctccaaggcgttaaaattaacgataaacatatcgaagttattattcgtcaaatg
ttacgtaaagcaacaattactagcagcagtcgcttggatttcctagaaggcgaacaggca
gaatactcacgtatcaagacggccaaccgtcaatcattaaataacgggaagatgcaaatg
agctatatacgtgatcttttaggtattacaaaagcctcgctggctacggaatcctttatc
tctgcagcatcattccaggaaactacgcgcgtgctaaccgaagccgccgttgccggaaaa
cgagatgagctacgtggtttgaaggaaaatgttattgttggacgtttaatcccagcgggt
actggttatgcgcatcatcaagaacttgcgcgttatcgtcaacggaatcccggggtaatc
gcagcctcaccaccgattaccgccgatgaagcttcagctaacttatcggaactcctaaat
gcaggactaggaagaaataataaataa
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