Shewanella aegiceratis: K0H80_02315
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Entry
K0H80_02315 CDS
T09153
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
saeg
Shewanella aegiceratis
Brite
KEGG Orthology (KO) [BR:
saeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saeg03021
]
K0H80_02315 (rapA)
Transcription machinery [BR:
saeg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
K0H80_02315 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Motif
Other DBs
NCBI-ProteinID:
QYJ82881
LinkDB
All DBs
Position
complement(499645..502551)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFSLGQRWISDTESELGLGTVIGLEGRMVTLMFPATDENRMFARDDAPLTRVIYNPGDI
IESHEGWSLKVSEIEEKNQLVIYHGIHTETGEEVSLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGVRYQSQLLRHKLATSDLLGLQGPRVGLIPHQQWIAHEVGQRFAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAYAD
HDNPFYTEQLVICSLELLRKKKRLDQALDADWDLMVVDEAHHLEWTEEEPSRAYRVVEAL
SEVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLKEEESYKEVASAADALASG
KRLPDEAVASLTELLNEKDITPALRLIEDESVDNEQRDQARSELLQELLDRHGTGRVLYR
NSRASVKGFPTRIFNAHPQTMPAQYETAARVSDMMGGQTDLTAKVKQALSPEKLYQAFES
DSASWWKFDPRVDWLIDFLKNHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQESGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQANDVEIHLPYLANTAQENLMNWYHKGLNAFEQTCPTGHILFNEFSEELLTQLVYRDE
DKFTQLLNHTQSRYKALKKAMEQGRDKLLEINSHGGDKAQKLVESLAARDQDTQLIGSVI
RLWDIIGVEQEDSGENAIVLHPSEHMMFPTYPGLPEDGITVTFDREMALSRDDIALITQE
HPLVQTGLDLITSSETGTTSVAVLKNKALPAGTIFLELIYMADASAPRSSQLYRYMPPTP
VRVLLDKNGNNLSQNVSYESFDKQLSAVNRHIASKLVNASQTLLHPLFAKGEEFAQAAMK
QLTEEASNKMTQQLTAELERLEALKAVNPNIRDEELEHLRNQMVELGNYLDACQLQLDAV
RLVLVSHA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccttaggtcaacgttggattagtgataccgaatcggaactcggtttaggt
actgtcattggactcgaaggccgtatggtcaccctgatgttccccgccactgacgaaaac
cgcatgtttgcccgcgacgatgccccgctaacccgagtgatctataaccccggcgatatc
attgagagtcacgaaggatggagtctcaaggtcagcgagatcgaagagaagaaccagctg
gtgatctaccacggtatccacaccgagaccggcgaagaggtcagcctcagagagacgctg
cttaaccacaatattcgtttcaacaagccccaagacaggctgtttgccggccagatcgat
cgtctggacagattcggcgtgcgctatcagagccagctgctgcgtcataagctggccacc
tcagatctgctgggcctacagggtccccgcgtcggcctgatcccccatcagcagtggatc
gcccatgaagtgggccaacgcttcgcaccgcgcgtcctgttagcggacgaggtgggcctg
ggtaagaccatcgaagccggcctgatcatccaccagcagctgctgaccggccgcgccgag
cgtatcctgatcatagtgccagacaccctacgccatcagtggttggtggagatgctgcgc
cgtttcaacctgcgcttctcggtgttcgatgaagacagatgcgtcgaggcctacgccgat
cacgacaaccccttctacacagagcagctggtgatctgttcactcgagctgctgcgtaag
aagaagcgcctggaccaggccctggatgccgactgggatctcatggtagtcgacgaggcc
caccacttggagtggaccgaagaggaaccgagccgcgcctatcgcgtggtagaggccctg
agtgaagtggtgcccggcgtgctgctactgacggctaccccggatcagctgggccaccag
agccacttcgcccgtctgcgcctgctggatccagaccgtttctacgactatcaggccttc
ctcaaagaggaggagagctataaagaggtagccagcgccgccgatgccctggccagcggt
aagcgtctgcccgacgaggccgttgccagcctaaccgagctgctcaacgagaaagatatc
accccggcgctgcgtctgattgaagatgagagcgtcgataacgaacaacgcgaccaggcc
cgcagcgagctgctgcaggagctgttagacagacacggcaccggccgtgtgctctatcgc
aacagccgcgcctcggtgaaaggcttcccgacccgtatcttcaacgcacacccacagact
atgccggctcagtatgagaccgccgccagggtgtcagacatgatgggtggccagacagat
ctgaccgccaaggtgaaacaggccctgagcccagagaagctgtatcaggccttcgagagc
gatagcgccagttggtggaagttcgatcctagggtcgactggttgatcgatttcctcaaa
aaccatcgcagcaagaaggtgctgatcatcgccagccaggcagagaccgccctgagcctg
gaagaagcgctgcgtacccgtgaaggtattcaggccaccgtcttccacgaaggcatgtct
atcatagagcgcgacaaggccggcgcctacttcgcccaggaaagcggcggcgcccaggcg
ctgatctgtagtgagatcggctcggaaggtcgtaacttccagtttgccagccacctggtg
ctgttcgacctgccgctgaatccggatctgctggagcagcgcatcggccgtctggaccgt
atcggtcaggccaacgatgtcgagatccatctgccttacctggccaacacggcccaggaa
aacctgatgaactggtaccacaagggactgaacgccttcgagcagacctgccctaccggc
catattctgtttaacgagttttccgaggagctgctgacccagctggtctaccgcgacgaa
gacaagttcacccagctgctcaaccacacccagagccgctacaaggcgctgaagaaggcg
atggaacagggccgcgacaagctgctggagatcaactcccatggcggcgacaaggcgcag
aagttggtggagagtctggcggcccgcgatcaggacacccagctgatcggctctgtgatc
cgcctgtgggatatcataggcgtcgagcaggaagacagcggcgagaatgccatagtgttg
cacccgagcgagcacatgatgttcccgacctacccgggtctgccggaagatggcattacc
gtcaccttcgaccgcgagatggcgctgtcacgcgacgatatcgccctgatcacccaggag
cacccgctggtgcagacggggctggatctgatcacctcttccgagacaggcaccaccagc
gtcgccgtgctcaaaaacaaggcactacctgcgggcaccatcttcttggagctgatctat
atggccgatgcctcggcgccgcgctcgagccagctctaccgctacatgccaccgacgcca
gtacgtgtgttgctggacaaaaatggtaacaacctgtcgcagaacgtcagctacgagagc
ttcgacaagcagctgagcgcggtcaaccgccatattgccagcaagctggtgaacgcctcg
caaaccctgctgcatccactgtttgccaagggggaagagtttgcccaggcggcgatgaaa
cagctgaccgaagaggccagcaacaagatgacccagcagctcaccgcagagctggaacgt
ctggaggccctcaaggcggtcaatcccaacattcgtgacgaggagctggaacacctgaga
aatcagatggtcgagctgggcaactacttagatgcctgtcagctacaactggacgccgtg
cgtctggtgctagtcagccacgcctaa
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