Shewanella aegiceratis: K0H80_08115
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Entry
K0H80_08115 CDS
T09153
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
saeg
Shewanella aegiceratis
Pathway
saeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H80_08115 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saeg03019
]
K0H80_08115 (rne)
03009 Ribosome biogenesis [BR:
saeg03009
]
K0H80_08115 (rne)
Enzymes [BR:
saeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K0H80_08115 (rne)
Messenger RNA biogenesis [BR:
saeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K0H80_08115 (rne)
Ribosome biogenesis [BR:
saeg03009
]
Prokaryotic type
rRNA processing factors
K0H80_08115 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QYJ83934
LinkDB
All DBs
Position
complement(1793429..1796845)
Genome browser
AA seq
1138 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELEVPQGMGLIVRTAGVGKDAAEL
KWDLKVLQHHWAAIEEAAQNRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQA
KQHVALVRPDFVDRIKRYEAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTP
DYRVTRHRKDDQISESSYKLLEQPESKLYEPRKLERAASPEPALKGFSTPVKDAPTQAAP
APAKQAEKAQEPGLIAKLFAAIGKLFGGEPEQPKEEVKKEQPRRNAQNRNTRRNNRRNDT
RKGRDEGKETDNKRSRSAKPDDADSRSAKSRNEKRQKRDRDDKPQSQSKDTESQAQQPKQ
EAARERRQRRNMRRKVRVQSEQQLADEAALAVEVAEKANDEQVQVPAAEATAEDKPQRQK
RQPRKSKPKQDKADKLEEETQAEQVAAEDTAGEQPAVETQAANEPQAAVDTEVTAQGEAH
ADEAQAEEASAQPQEGELEGKREPREGQRRSRRSPRHLRAAGQRRRRDEEGNGEVSNGEP
AFIPNEVETAPLLGEQLEQEGSVVEAVSEVQAPVTEQEAVTQETDEVTTVAETTVTETTV
TETTVAEEAPAKAAAEEASQEESKPKSRRRAPKAKVASEEETSVEEAQQSLPLAGEAKAS
LKEEVQAELDLTSTPEEVKASQEAAPQVDDVAAQTEEPVAVETAPVETPEVEIEAKTETE
APVTEAPAAKESSAASAPMAKPAAVQAPTAKVKPAAKVEATPAEEKPEETASDEAEKPAP
KATSRFGSMVSSTMTKPEVEARALVDTPSGRQYEATAKEASAEPVKRGNSANSEMARP
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaattaatgcgactcaatctgaagagttgcgcgttgccctcgttgat
gggcaacaactgtacgatctcgacattgagagtcctggtcacgagcagaagaaagccaac
atctacaagggtaaaatcacccgcgtagaaccctctctcgaagcggctttcgtcgactat
ggcgccgagcgtcatggtttccttcccctcaaagaaattgcacgcgaatacttccctaaa
ggttactctttccaaggccgtcctaacatcaaagaggtggttaaagaaggtcaggaagtc
atagtacagattgacaaagaagagcgtggcaacaagggcgcggccctgaccaccttcatc
agtctagcaggctcttacctggtgctgatgccaaacaaccctcgcgccggcggtatctct
cgtcgaatcgaaggtgatgagcgtaccgagctaaaagcggccatgtcagagctagaagtg
ccgcaaggcatggggcttatcgtacgcaccgcgggtgtaggtaaagacgccgccgagctg
aaatgggaccttaaggttcttcagcaccactgggctgccatcgaagaagcggcgcaaaac
cgccctgcacctttcctgatccatcaggaaagtaacgttatcgtacgcgccatccgtgac
tacctgcgccgcgacgtaggcgaagtcctgatcgaccatcagcgtatctacgaacaggcc
aaacaacacgtggctttggtacgtccagactttgtcgatcgtatcaagcgctacgaggcg
gaagtaccgctgtttacccatttccagattgaaactcagatcgaatcggccttccagcgt
gaagtgcgtcttccttctggcggttctatcgttatcgatccaaccgaagcattgacctca
atcgatatcaactcggcccgtgcgactaagggcggcgatatcgaagaaactgcgctcaat
accaaccttgaagcggccgacgagattgcccgtcagctgcgtctgcgtgacttgggtggt
ctggttgttatcgatttcatcgacatgacaccagtcagacaccaacgcgaagtcgaaaac
agaatgcgcgatgccgtgcatcacgacagagcccgtgttcaactgggccgcatctctcgc
ttcggtctgatggagatgtcgcgtcagcgtctgcgtccgtcactggaagagtctgctgcg
cacctgtgtccacgctgtcatggccaaggtaccattcgtggtaccgagtcactggcgctc
tctatcctgcgtctgatggaagaggaagcgatcaaagagaacacctctcagattgaagct
atcgtccctgtcgatgtcgccgccttcctgctcaacgagaagcgtaaagccattcgtatc
actgagcagcgtcatgatgtcgaagtctatgtgatcccagatccaaacatgacgacacct
gactaccgtgtgacccgtcaccgcaaagacgatcagatcagtgagtcaagctacaagctg
ctcgagcagcctgagtctaagctctacgagcctcgcaaactagagcgcgccgcgtctcca
gagccagcactgaaaggcttctcgacgccggttaaggatgcgccaacccaggcggctccc
gcaccagccaagcaggccgaaaaggctcaagagccaggtttgatcgccaagctatttgcc
gccatcggcaagctgtttggtggtgagccagagcagccaaaggaagaggtcaagaaagag
cagcctcgtcgcaacgctcaaaaccgtaacactcgtcgcaacaaccgtcgcaacgataca
cgtaagggccgcgacgaaggcaaagagaccgacaacaaacgcagccgtagtgccaagcct
gatgacgcggatagccgcagtgcgaagagccgtaacgagaaacgccaaaagcgtgatcgt
gacgacaagccgcagagtcagagcaaagacactgaaagccaagcgcagcaaccaaaacaa
gaagctgctcgcgagcgtcgtcaacgccgcaacatgcgccgcaaggtacgtgtgcagtct
gagcaacagcttgccgatgaggccgcactcgccgtcgaggttgccgagaaggccaacgac
gagcaggtacaagtgccagccgcagaggccactgcagaggataagccacagcgtcagaag
cgtcagccacgtaagagcaagcctaagcaggataaagccgacaagctagaggaagagact
caagccgagcaagtcgccgctgaagacacagccggcgagcagccagcagtcgagactcaa
gccgcaaacgaacctcaagcagcagtcgacaccgaagtgacagcacaaggcgaagcgcat
gccgacgaagctcaagcagaagaggctagtgctcaaccgcaagaaggcgagttagaaggc
aaacgcgagccaagagaaggccaacgtcgtagtcgtcgtagcccacgtcatctgcgcgcc
gccggtcaacgtcgtcgccgcgatgaagaaggcaatggtgaagtgagcaatggcgagccc
gccttcattccaaacgaggtggaaactgcgcctctgctgggtgagcagcttgagcaagaa
ggcagcgttgttgaagccgttagcgaagtacaggcgcctgtgaccgagcaagaagcggtt
acacaagagactgacgaagtaactacagtcgccgaaacgactgtcaccgaaaccacagtc
accgaaacgactgtcgccgaggaagcacctgctaaagcggctgccgaagaagcttctcaa
gaagagagcaagcctaagtcaagacgtcgtgcacctaaagccaaagtcgcttctgaagag
gaaacctctgtagaagaagctcagcagagcctacctctggcaggcgaggcgaaagctagt
ctgaaagaggaggttcaggcggagctggatctaaccagcacacctgaagaggttaaggcc
agccaggaagcggcgcctcaagttgatgacgtcgcagcgcagaccgaagagccagtggca
gtagaaactgcgccagtcgagacgcctgaagtcgaaattgaagctaagactgaaactgaa
gcgccagttactgaagcgcctgcagccaaagagagcagcgccgcctctgcccctatggca
aagcctgcagccgtgcaagccccgaccgctaaggtaaaacctgcggctaaagttgaggca
acgccagcagaggaaaagccagaagagacggctagcgacgaggctgagaagcctgcacct
aaggctaccagccgcttcggttccatggtgagttctaccatgaccaaacctgaggtagaa
gccagggcgctcgtggacaccccatcgggacgtcaatatgaagccacggcaaaagaagcg
tcggccgagccagtgaaacgcggtaacagcgcaaactcggaaatggcacgtccctaa
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