Shewanella aegiceratis: K0H80_08955
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Entry
K0H80_08955 CDS
T09153
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
saeg
Shewanella aegiceratis
Brite
KEGG Orthology (KO) [BR:
saeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saeg03019
]
K0H80_08955 (hrpA)
Enzymes [BR:
saeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K0H80_08955 (hrpA)
Messenger RNA biogenesis [BR:
saeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0H80_08955 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
SLFN-g3_helicase
nSTAND_NTPase5
nSTAND3
T2SSE
NACHT
EAL
PhoH
WHD_HA2
TsaE
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYJ84097
LinkDB
All DBs
Position
1983291..1987178
Genome browser
AA seq
1295 aa
AA seq
DB search
MNSPRHPLSHAFLNQCFQADASRIKRRLHRLKKQADGEQKDEALAQLEEQAIAAAAKVES
RRQNRPEINYPDALPVSQKRGEIAEAIANNQVVIVAGETGSGKTTQLPKICLELGLGTRG
LIGHTQPRRLAARSVASRVAEELNSPLGEVVGFKVRFADAIKPTSYIKLMTDGILLAELS
SDKYLDQYDTIIIDEAHERSLNIDFILGYLKSVLKRRPDLKVIITSATIDVERFSKHFNN
APVIEVSGRTYPVETRYRPLVGEQDEDLDLTDGIFAAVEELMAEGPGDILIFLNGEREIR
DLADQLNKQQYRDTEVLPLYARLSYGEQSKVFKSHRGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVAPGICIRLYDEADFNNRPEFT
DPEILRTNLASVILQMLSIGLGDIEGFPFIQPPDARYIRDGFLLLEELQSVRKHKGQLQL
TPLGRQLASIPVDPRLARMVVQAKEYGCLHETLVITAGLSIQDPRERPMDKKQAADEAHR
RFNDKDSDFIAWVKLWDHIKEQQKALSASQFRKLCKQEFLAYLRVREWQDLYTQLRQAVH
DLKWKLNSEPADYELLHKSLLTGLLSHIGFKDKDNEYLGARNRKFFVFPGSPLAKKGPKW
IMAAEMTETSRLFARCCAKIQPEWVEPLAGHLVKKSYVEPHFEAKQGSVVALENQQLYGL
TIVNRRRVQYGPVEPVEAREIFIRSALAEGELRTKEAFFVKNRALIDDIEALEHKSRRRD
ILVDEQALVDFYETRIPEGIYNAPKLLTWWKQEKKRQPHLLDFEREQLMKRSDEHISALD
FPDNWHQGNFNLPLSYHFEPADVDDGVSVHLPVALLNQIEAQGFDWLVPGLREEKITALI
KSLPKTLRRNFVPAPDYARACLQAMANTNSSSEMSLLEAMCKQLLRMSGVRISVDDFDLT
QLAPHLLINFKVEDDKGKLIAQGRELEQLKDKLQGRVTQAIRNVAESGIEQSELTQWSFG
DLPKQYEKKRGNFQVKAFPALVDNKDSVAIKLFDDEHEAGRCHKAGLQRLLLLNMPSPVK
HLQNTLPNKAKLAMYFNPFGQVQYLIDDILSAAVQQLLDEKGLDVRSAEQFDQAKDLVRQ
DLNPTAAKIALQVEEILTLYQKVKKRLKGKISLDIAFAMSDIQTQLDNLVFKGFVEQCGW
QRLSDLIRYIKAIDNRLDKLPVDPNRDRLHLHSINNVQQTLAAQLAKVPRSAAVPEALQE
ARWMIEEYRVSCFAQVLGTAYPISEKRILNRIAEA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
ttgaattcgccacgtcaccccctgtctcatgcctttctcaaccagtgttttcaggccgat
gcctctcgcatcaagcgccgccttcatagactgaaaaaacaagccgacggtgagcagaaa
gatgaggcgctggcccagttagaagagcaggccattgccgccgcagctaaggtggagagc
cgcaggcagaatcgccccgagatcaactatcccgacgccttgcccgtgtcgcaaaagcga
ggcgagatagccgaggcgatcgccaacaaccaggtggtgatagtggccggtgaaaccggc
tcgggtaagacgactcagctgccgaagatctgtctcgagcttggcctgggcacccgcggc
ctgattggccacacccaaccaaggcggctggccgcccgcagcgtggcgagccgtgtggcc
gaggaactaaacagcccactgggcgaggtggtgggctttaaggtgcgtttcgccgatgcc
atcaagccgacctcttacatcaagctgatgacagacggtattttgctggcggagctgagt
tcagacaaatacctggatcagtacgacaccatcattatcgatgaggcccacgagcgaagc
ctgaatatcgacttcatcctgggttacctcaagagcgtgctcaagcgccgtccggatctt
aaggtgatcatcacctcggccaccatagacgtggagcgtttctctaagcatttcaataat
gcgcctgtgatcgaggtctcgggccgtacctatccggtggagacccgctaccgtccgcta
gtgggcgagcaggatgaagacttagatctcaccgatggcatcttcgccgcggtggaggag
ctgatggccgagggaccgggggatatcctgatcttcctcaacggcgagcgcgagatccgt
gacctggcggaccagctcaacaaacagcagtaccgagataccgaggtgttacccctttat
gcgcgcctctcctatggtgagcagtccaaggtatttaagagtcatcgcggacgccgcata
gtgctggccaccaacgtggcggaaacctccttgacggttcccggcatcaagtatgtgatc
gacccgggtacggcgcgcatcagccgttacagctatcgcactaaggtgcagcgtctgcct
attgagcctatctctcaggcgagcgccaaccagcgtcagggccgttgtggccgtgtggcg
ccggggatctgtattcgtctctatgatgaggcggactttaacaaccgccccgagtttacc
gaccccgagatcctaaggaccaacctggcctctgtcattttgcagatgctctccatcggc
cttggcgacatcgaaggcttccccttcattcagccacccgatgcccgctatatccgtgat
ggtttcctgctgctggaagagctgcagtcggtgcgcaaacacaaggggcagctgcaactt
acgccccttggacgtcagttggcgagtatccctgtggatccgcgcctggcgcggatggtg
gtgcaggccaaggaatatggctgcctgcatgagacattggtgatcaccgcaggcttgtcg
atccaagatccccgcgagcgcccaatggataagaagcaggccgccgatgaggcccacaga
cgcttcaacgacaaggactctgatttcatcgcctgggtcaagctgtgggatcacatcaag
gagcagcagaaagccctgtccgcgagtcagttccgtaagctgtgtaagcaggagtttctc
gcctatctgcgggtgcgtgaatggcaggatctctatacccagctgcgacaggcggtgcac
gacctcaagtggaagctcaacagcgagcccgccgactatgagctgctgcataaatctttg
ctgaccggcctgctgagccatatcggtttcaaggataaggacaacgagtatctgggggcg
cgtaaccgcaagttcttcgtcttccccggctcgccgctcgccaagaagggacctaagtgg
atcatggccgccgagatgaccgagacctcacgcctgtttgcccgctgctgcgccaagatc
cagcccgaatgggtcgagcctctggccggccatctggtgaagaaaagctatgtagagccc
catttcgaggccaagcagggcagtgtggtggcgctggaaaaccaacagctctacggcctg
accatagtcaatcgccgccgggtgcagtatggcccggtggagccggtggaggcccgcgag
atcttcattcgcagcgccctggccgaaggtgagctgcgcaccaaggaggcgtttttcgtc
aagaaccgcgccctgatcgacgatatcgaggcgctggagcacaagtctcgccgccgcgac
atcttggtggacgagcaggcgctggtggatttctatgagacgcgcatccccgaggggatc
tacaacgcgcctaagctgctgacctggtggaagcaggagaagaagcgccagccgcatctg
ctggactttgaacgtgaacagctgatgaagcgcagcgacgagcatatctcggcgctggac
ttccccgacaactggcatcagggcaactttaacctgccgctgagttatcactttgagccg
gcggatgtagatgacggcgtgtcggtgcatctccccgtcgcgctgctcaatcaaatcgag
gcccagggcttcgactggttggtgccgggcctgcgcgaagagaagatcaccgcgctgatc
aagtccctgcctaagacactgagacgtaacttcgtgccggcgccggattatgccagggcc
tgcttacaggcgatggctaatactaacagcagcagtgagatgagtctgctggaggccatg
tgtaagcaacttctgcgcatgagcggcgtgcgtatctcggtcgatgatttcgatctcacc
cagctcgcccctcatctgctgatcaacttcaaggtggaagatgacaagggcaagttgatc
gcacagggcagggagcttgagcagctaaaagataaacttcagggcagggtaacccaggcg
attcgcaacgtcgccgagagcggtatagagcagagtgagctgactcagtggagctttggc
gatctgcccaagcagtatgagaagaagcggggtaacttccaggtgaaggccttccccgcg
ctggtggacaataaggatagcgtggccatcaagctgtttgatgatgaacatgaggccggc
cgctgccataaggcgggtctgcagcgcctcttgctgcttaacatgccatcgccggtgaag
cacctgcagaacaccctgcccaataaggccaagttggccatgtacttcaacccctttggc
caggtgcagtatctgatcgacgatatcctgtcggcggcggtgcagcaactgctggatgag
aagggcttagatgtgcgcagcgccgagcagttcgaccaggctaaagatttggtgcgtcag
gatcttaaccccacggcggccaagatcgccctgcaggtggaggagatcttgaccctgtat
cagaaggtgaagaagcgcctcaagggcaagatcagcctggatatcgccttcgccatgagt
gacattcagacccagttggataacctggtattcaagggctttgtcgagcagtgcggttgg
cagcgactttctgatttaatccgttatatcaaggcgatagataatcgtttagataagctg
ccagtggatcctaaccgtgaccgcctgcacctgcacagcatcaacaatgtgcagcagacc
ctggcagcccagctggccaaggtgccccgcagcgcggcggtgcccgaggcactgcaggag
gctcgctggatgatagaggagtatcgcgtctcctgtttcgctcaggtgttaggtaccgcc
tatcccatctcggagaagcggatcctcaaccgcatcgccgaagcctga
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