Shewanella aegiceratis: K0H80_16765
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Entry
K0H80_16765 CDS
T09153
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
saeg
Shewanella aegiceratis
Pathway
saeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H80_16765 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saeg03019
]
K0H80_16765 (rnr)
03016 Transfer RNA biogenesis [BR:
saeg03016
]
K0H80_16765 (rnr)
Enzymes [BR:
saeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K0H80_16765 (rnr)
Messenger RNA biogenesis [BR:
saeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K0H80_16765 (rnr)
Transfer RNA biogenesis [BR:
saeg03016
]
Prokaryotic type
tRNA degradation factors
K0H80_16765 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
HTH_11
Motif
Other DBs
NCBI-ProteinID:
QYJ81927
LinkDB
All DBs
Position
complement(3866897..3869371)
Genome browser
AA seq
824 aa
AA seq
DB search
MIKDPHLKREQEKYDNPIPSREYILDYLRSQQSPLNREKIAQALKISDEEQLEALRRRLR
AMERDGELVFTRGQAYGLPERMDLLSGTVLGHKDGFGFLKLDEGGDDLFINNRDMLMYFH
GDKVLAQKAGVDRKGRREARIVRLTHERTAPLVGRFHLDSGMAFVIADDKRITQEILIPD
DDRNGARQGDVVVVELTRRPGRYMKAAGKVTEVLGKEMAPGMEIEIALRNYDLPHTWSSL
IEKKLRKIPDEVTEEDKQGRVDLRKLPLVTIDGEDARDFDDAVYAETKKSGGWRLWVAIA
DVSHYVRTESALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTIS
AAGKLSGYKFYPAVMHSHARLTYTQVAEMLEGGEVSDELKPIFPHLQTLQSLYLTLDDTR
AQRGAIAFETTETQFIFNADRKIERIEPRTRNQAHKIIEECMILANVAAAKFVKKHKGEV
LYRVHEAPSEQKLTNFKDFLKERGLSMGGGLEPEPADYQALMEQVVDRPDAELIQVMLLR
SMRQATYTPDNEGHFGLALEEYSHFTSPIRRYPDLILHRVIRYLLSKERGEANDKWTPDG
GYHYQIEELDLLGEECSNTERRADEATRDVSDWLKCEFMRDHVGDTFEAVIASVTHFGMF
VRLSDLFIDGLVHISTLGGDYYHYDNMRQRLVGEASGQVYQIGDPVTVKVAAVNLDDRQI
DLMMVGDDGKTSRPRRAKKPLTARERVNLEGAKMARKGKEDDKPSGKRRSARRSDAKPGT
SKPGAGKSGAGKAGASKSKAGAKKSSAKPGAKKRKSVKKRSSKK
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatccgcatttaaagcgtgaacaagagaagtacgacaaccccattcctagt
cgtgagtatattttagattacttacgctcacagcaatcacccctcaatcgcgagaaaatc
gcccaggcgctgaagatcagcgacgaagagcagctcgaagccttgcgccgtcgcctcaga
gccatggagcgagacggtgagctggtctttacccgtggccaggcctatggtctgcccgag
cgtatggatctgctcagcggcaccgttctggggcacaaggatggcttcggcttcctcaaa
ctcgatgagggcggcgacgacctcttcatcaacaaccgtgacatgctgatgtattttcac
ggcgacaaggtattggcccagaaggctggcgtcgatcgcaaggggcgccgcgaggctcgt
atcgtccgtctgacccatgagcgcaccgcgcctctggtggggcgtttccacctggattca
ggtatggcctttgtcatcgccgacgacaagcgcatcacccaggagatcctgatccccgac
gacgatcgcaacggcgcccgtcagggcgatgtggtggtggtcgagctgacacgccgcccc
ggtcgctacatgaaggcagcgggtaaggtcaccgaggtactgggtaaagagatggcgcct
ggcatggagatagagattgccctgcgcaactatgatctgccccatacctggtcaagcctg
atcgagaagaaactgcgtaagatccccgatgaggtgaccgaagaggataagcaaggcaga
gtcgatctgcgcaaactgcctctggttaccatagacggtgaagatgcgcgcgacttcgac
gatgccgtgtacgccgagaccaagaagagcggcggctggcgcctgtgggtcgccatcgcc
gacgtgagtcattatgtacgcaccgagtcggcgctggacaaagaggcccgcgcccgcggt
aactccgtctatttcccgtctcaggtgatccccatgttgccggagaagctgtctaacggc
ctctgctccctcaaccctggggtcgatcgcctctgcatggtggccgagatgaccatctcg
gcggcgggtaagctgtcgggttataagttctacccggccgtgatgcactcccacgcgcgc
ctcacctatacccaggtggcggagatgctcgagggcggcgaggtgagcgatgagctcaag
ccaatcttcccgcatctacagaccctgcagtcgctctacctgaccttggatgatacccgt
gcccagcgcggcgctatcgccttcgagaccacggaaacccagtttatcttcaacgccgat
cgtaagatcgagcgcatcgagccgcgcacccgtaaccaggcccataagatcatcgaagag
tgcatgatcctggccaacgtggcggcggccaagtttgtgaagaagcataagggcgaggtg
ctctaccgggtgcatgaggcgccgtctgagcagaagctgactaacttcaaggacttcctc
aaagagcgcggcctgtccatgggcggcggcctagagcctgagccggccgactatcaggcc
ttgatggagcaggtggtcgaccggcccgacgccgagctgatccaggtgatgttgctgcgc
tccatgcgtcaggccacctacaccccggataacgagggccacttcggcctggcgctggag
gagtactcgcactttacctcgccgattcgtcgctacccggacctcatccttcacagggtg
atccgttacctgttgtcgaaagagcgcggcgaagccaacgacaagtggacgccagatggc
ggttatcattatcagatcgaagagctggatctgctgggcgaggagtgttccaacactgag
cgacgcgccgacgaggcgacccgcgacgtcagcgactggctcaagtgtgagtttatgcgt
gaccatgtgggcgacaccttcgaggcggtgatcgcctctgtgactcactttggcatgttt
gtccgcctgagcgatctcttcatcgacggcctggtgcatatctccaccctgggtggcgac
tattatcactatgataatatgcgtcagcgcctggtgggcgaggcctcgggccaggtgtat
cagataggcgacccagtcaccgtcaaggtggccgcggtcaacctggatgatcgccagatc
gatctcatgatggtgggcgatgatggtaagacatcacgcccccgccgtgccaagaagcct
ctgaccgcccgcgagcgggtcaatctcgagggcgccaagatggcgcgcaagggtaaagaa
gatgacaagccgagcggtaagcgccgctccgctagacgcagtgacgctaaacctgggaca
agtaagcccggagcaggtaagtcgggagccggtaaggctggcgcgagtaagtcaaaggcc
ggggcaaagaagtcatcggccaagccgggcgccaagaaacgtaagagcgtgaagaagcgc
agcagtaagaaataa
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