Sphingomonas aerolata: NEF64_01840
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Entry
NEF64_01840 CDS
T08450
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
saer
Sphingomonas aerolata
Pathway
saer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEF64_01840 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saer03019
]
NEF64_01840 (recQ)
03400 DNA repair and recombination proteins [BR:
saer03400
]
NEF64_01840 (recQ)
Enzymes [BR:
saer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NEF64_01840 (recQ)
Messenger RNA biogenesis [BR:
saer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NEF64_01840 (recQ)
DNA repair and recombination proteins [BR:
saer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NEF64_01840 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
USR00633
LinkDB
All DBs
Position
complement(390932..392701)
Genome browser
AA seq
589 aa
AA seq
DB search
MALDPLPDLQRIFGFPDFRGVQRDVVDRVLAGQRTLAVMPTGAGKSLCYQLPATMLEGTC
VVVSPLIALMHDQLRAATAVGIKAATLTSVDTNREETIARFRAGDLDLLYVAPERASNES
FRNLLSQAKLSLFAIDEAHCVSEWGHDFRPDYRLLRPLLDSFPDVPRLALTATADAHTRA
DILEQLGISQDGLIVSGFDRPNIRYAISARDNVNRQIADILEKIPGPGIVYAQTRAATEK
LAEALGRSGRPTRAYHAGLDPQVRAKNQADFVASEDMVICATVAFGMGIDKPDVRFVAHA
GLPKSIEAYYQETGRAGRDGDPAIAHLFWGAEDFARARQRIGEVEPERQAGERQRLTAMG
GLVETAGCRRRILLKHFGEERLEDCGNCDNCLGNVDAVDATETARKFLSAVFRTGQMFGV
GYIEGILTGVSSERSLMNGHEALSVYGIVEGDEVALLKPVSRALMLKDALRTNPHGGLEF
GPAAKAILKGEAALSVIVPPKRERRRKAAPGAVPNPVDDPLFEALRVCRRDLAKDAGVPP
YVIFHDSVLRDMAAQRPASRAALAVLSGIGARKLDAYGDAFLAVIRESA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcactcgacccccttcccgatctccagcgcatcttcggctttcctgattttcgtggc
gtacagcgcgatgtcgtcgaccgcgtgcttgcggggcagcggacgctggcggtgatgccg
accggggctggcaagtcgctgtgctaccagttgccggcgacgatgctcgaggggacgtgc
gtggtcgtgtcgccgcttatcgcgctgatgcacgaccagctgcgtgccgcgaccgcggtc
gggatcaaggcggcgacgctgacgagcgtggataccaatcgcgaggagacgatcgcgcgg
ttccgcgcgggcgatcttgatctgctgtatgtcgcgcccgagcgggcctcgaacgagagt
tttcggaacctcctgtcgcaggccaaactgtcgctgttcgcgatcgacgaggcgcactgc
gtcagcgaatgggggcatgacttccgccccgactaccgcctgctgcggccgctgctcgac
agctttcccgacgtgccgcggctcgcgctgaccgcgacggcggatgcgcatacgcgggcg
gatatcctcgaacagctggggatctcgcaggacggcttgatcgtgtcggggttcgaccgg
ccgaacatccgctatgcgatttcggcgcgcgacaacgtcaaccggcagatcgccgacatc
ctcgagaagatcccggggccggggatcgtctatgcgcagacgcgcgcggcaaccgagaag
ctcgccgaggcgctggggcgcagcgggcggccgacgcgcgcctatcatgccgggctcgat
ccgcaggtgcgcgcgaagaaccaggcggatttcgtcgcgagcgaggacatggtgatctgc
gccacggtcgcgttcgggatggggatcgacaagcccgacgtgcgcttcgtcgcgcatgcc
gggctgccgaagtcgatcgaggcctattatcaggagacggggcgcgcggggcgtgacggc
gatccggcgatcgcgcatctgttctggggcgcggaggatttcgcgcgcgcacgccagcgg
atcggcgaggtcgagcccgagcggcaagcgggcgagcgccagcggctgaccgcgatgggc
gggctggtcgagaccgcggggtgtcggcgacgcatcctgctcaagcatttcggtgaggag
cgactcgaggattgcggcaattgcgacaattgcctcggcaatgtcgatgcggtcgacgcg
accgagaccgcgcggaaattcctgtcagcggtgttccggacggggcagatgttcggcgtc
ggctatatcgagggcatcctgacgggcgtgtcgagcgagcgcagcctgatgaacgggcat
gaggcgctgtcggtctacgggatcgtcgagggcgacgaggtggcgctgttgaaacccgta
tcgcgcgcgctgatgctgaaggatgcgctgcgcaccaatccacacggcggcctcgaattc
ggaccggcggcaaaggcgattctcaagggcgaggcggcgctgtcggtgatcgtgccgccc
aagcgcgagcggcggcgcaaggctgcaccgggcgcggtgccgaacccggtcgacgatccg
ctgttcgaggcgctgcgcgtatgccgccgcgatctggcgaaggacgcgggcgttccaccc
tatgtgatcttccacgattcggtgctgcgtgacatggcggcgcagcgacccgcatcgcgc
gcggcgctcgcggtgttatcgggcattggcgcgcgcaagctcgacgcctatggggatgcc
tttctggcagttatccgcgagtccgcatga
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