Sphingomonas aerolata: NEF64_02105
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Entry
NEF64_02105 CDS
T08450
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
saer
Sphingomonas aerolata
Brite
KEGG Orthology (KO) [BR:
saer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
saer03016
]
NEF64_02105
Enzymes [BR:
saer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NEF64_02105
Transfer RNA biogenesis [BR:
saer03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NEF64_02105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
USR00680
LinkDB
All DBs
Position
complement(446700..447320)
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AA seq
206 aa
AA seq
DB search
MTVYLHEGDIPSGIFAPGASIAVDTETMGLITPRDRLCVVQLSDGGADEHLVRFAADSDY
AAPNLKALLADPERLKLYHFGRFDIAAVQHYLGVVAAPAYCTKIASRLVRTYTDRHGLKE
LVRELLGQDVSKQQQSSDWGSPQLSEAQKDYAASDVRFLHRMKEELDKRLIREGRMELAQ
KCFDFLPTRAALDLAGWPEIDIFAHA
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgacagtgtatcttcatgaaggcgacatcccgtccgggatcttcgcaccgggcgcctcg
atcgccgtcgacaccgagaccatgggcctcatcacgccgcgcgaccggctctgcgtcgtg
cagctgtcggatggtggcgcggacgaacatctcgtccggttcgcggccgacagcgactat
gcggcgcccaacctcaaggcgctgctcgcggatccggagcggctgaaactctaccatttc
ggacgattcgatatcgccgcggtccagcattatctcggcgtcgtcgcggcgccggcctat
tgcaccaagatcgcgtcgcgactcgtccggacctataccgaccggcacggcctcaaggag
ctggtccgcgaactgctgggccaggacgtgtcgaagcagcagcaatcctccgactggggg
agcccgcagctcagcgaggcgcagaaggactatgccgcgtccgacgttcgcttcctgcac
cggatgaaggaagagctcgacaagcggttgattcgcgaaggccgcatggagctcgcgcag
aaatgcttcgacttcctgccgacccgtgccgcgctcgatctcgccggatggcccgagatc
gacatctttgcgcatgcctga
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