Sphingomonas aerolata: NEF64_02260
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Entry
NEF64_02260 CDS
T08450
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
saer
Sphingomonas aerolata
Brite
KEGG Orthology (KO) [BR:
saer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saer03032
]
NEF64_02260 (gyrB)
03400 DNA repair and recombination proteins [BR:
saer03400
]
NEF64_02260 (gyrB)
Enzymes [BR:
saer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
NEF64_02260 (gyrB)
DNA replication proteins [BR:
saer03032
]
Prokaryotic type
DNA Topoisomerases
NEF64_02260 (gyrB)
DNA repair and recombination proteins [BR:
saer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NEF64_02260 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
Motif
Other DBs
NCBI-ProteinID:
USR00708
LinkDB
All DBs
Position
472169..474709
Genome browser
AA seq
846 aa
AA seq
DB search
MLGMASNPESNNPNLPNQGDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVS
DNAIDEALAGHCDRIDIVLNADGSVSVTDNGRGIPTGIHTEEGVSAAEVIMTQLHAGGKF
ENTSDENAYKVSGGLHGVGVSVVNALSEWLDLTIWRDGKEHYMRFAFGDAVLPLKIVGDA
AEGQKGTRVTFFPSPATFKITDFDFDKLEHRYRELAFLNSGVRLFLTDARHEELKTVELY
YEGGIAAFVKYLDRAKLPLMPEPVAISGTRDDVTMDVALQWNDSYYENVLAFTNNIPQRD
GGTHMAAFRAALTRTLNNYAEKSGLLKKEKVQLTGEDMREGLTAIVSVKLPDPKFSSQTK
DKLVSSEVRQPLESLMADKMAEWLEENPAHGKAIVAKIIDAAAAREAAKRARELTRRKGV
MDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRHFQAILPLRGKILNTERAR
EDRMLSSREIGTLITAMGTGIRDDFNADKLRYHKIVIMTDADVDGAHIRTLLLTLFYRHM
PKIIEGGYLYIAQPPLYKATKGRSEMYLKDDAALDEYLVDAGVGSMVLEGPGGARSGRDL
KDLVDHARRMRTLMRYVPKRYDAGMIEALALGGVFDPEASVADRTSRLEIVTRRLELDDG
DARWTAELTQDGGIHFQRAWRGVTDHHIIEASFLVSAEARKLHALSAEQSDSYARTSNLV
PASKAAHADEPEVEDAAETGAGVIGSATAVATRGSTQVSRPSHLLDAILAAGRKGLAIQR
YKGLGEMNAEQLWETTLDPSVRSMLRVTAVNAESANEIFTQLMGEVVEPRREFIQDNALN
VANLDV
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcatggcatccaaccctgaatccaacaatcccaacctgcccaaccagggcgac
tatggcgcagactcgatcaaggtcctcaagggcctcgacgcggtccgcaagcgccccggc
atgtatatcggcgacaccgacgacgggtcgggcctccaccacatggtgttcgaggtcagc
gacaacgcgatcgacgaggcgctggccgggcattgcgaccggatcgacatcgtcctgaac
gccgacggttcggtcagcgtcaccgacaatggccgcggcatccccaccggcatccacacc
gaggaaggcgtgtccgcagccgaggtcatcatgacccagctccacgctggcggtaagttc
gagaacaccagcgacgagaacgcctacaaggtctcgggcggcctgcacggcgtcggcgtc
tcggtcgtcaacgcactcagcgaatggctcgacctgacgatctggcgcgacggcaaggag
cattacatgcgcttcgcgttcggcgacgcggtgctcccgctcaagatcgtcggcgacgcg
gccgagggccagaaggggacgcgagtcacattcttcccgtcgcccgcgaccttcaagatc
accgatttcgacttcgacaagctcgagcaccgctaccgcgaactcgccttcctcaattcg
ggcgtgcgcctgttcctgaccgacgcgcggcacgaggaactgaagaccgtcgagctctat
tacgaaggcgggattgccgcgttcgtgaagtatctcgatcgcgccaagctgccgttgatg
cccgagccggtcgcgatttcgggcacgcgcgacgacgtcacgatggacgtcgcgcttcag
tggaacgactcttattacgagaacgtcctcgccttcacgaacaacatcccgcagcgcgac
ggcggcacgcacatggccgcgttccgcgccgcgctgacccgcacgcttaacaattatgcc
gagaagtcgggcctgttgaagaaggaaaaggtccagctcactggcgaggacatgcgcgag
ggtctgaccgcgatcgtctcggtcaagctgcccgacccgaagttcagcagccagaccaag
gacaagctcgtctcgtccgaagtccgccagcccttggaaagcctgatggccgacaagatg
gccgaatggctcgaggagaaccccgcgcacggcaaggcgatcgtcgccaagatcatcgac
gccgccgccgcccgcgaagctgccaagcgcgcgcgcgaactgactcgccgcaagggcgtg
atggacatcgcctcgctgcccggcaagctcgccgactgccaggagcgcgatcccgccaag
tctgagttgttcctcgtcgagggtgactcggccggcggttcggcaaagcagggccgcgat
cgccatttccaggcgatcctccccctgcgcggcaagatcctgaacaccgagcgcgcgcgc
gaggaccgcatgttgtcgagccgcgagatcggcacgctcatcaccgcgatgggcaccggc
atccgcgacgatttcaacgcggacaagctgcgctaccacaagatcgtcatcatgaccgac
gcagacgtcgatggcgcgcacatccgcacgctgctgctgacgctgttctaccgtcacatg
cccaagatcatcgagggcggctatctctacatcgcgcagccgccgctctacaaggcgacc
aagggccgctccgagatgtacctgaaggacgatgccgcgctcgacgaatatctggtcgat
gcaggcgtcgggtcgatggtcctcgaagggcccggtggcgcccgctcgggtcgcgacctg
aaggatctggtcgatcatgcgcgccgcatgcgcacgctgatgcgctacgtccccaagcgc
tatgacgcgggcatgatcgaggcgctggcgctgggcggcgtgttcgatcccgaggcgtcg
gtcgcggaccgcacgtcgcggctcgagatcgtcacgcgtcgcctcgaactcgacgacggc
gatgcgcgctggaccgccgagctgacgcaggatggcggcatccatttccagcgcgcgtgg
cgcggggtgactgatcaccacatcatcgaggcgagcttcctcgtctcggccgaggcgcgc
aagctgcacgccctgtcggccgagcagtcggacagctatgcgcgcacctcgaacctcgtc
cccgcgagcaaggcggcgcatgccgacgagcccgaggtggaagacgccgcagagaccggt
gccggcgtgatcgggtccgccaccgcggtcgcgacgcgcggctcgacgcaggtgtcgcgc
ccgagccatctgctcgacgcgatcctcgccgccggccgcaagggccttgcgatccagcgc
tacaaggggctgggcgagatgaacgcggaacagctgtgggaaaccacgctcgatccgtcg
gtccgctcgatgctgcgcgtgaccgcggtcaatgccgagagcgcgaacgagatcttcacg
cagctgatgggcgaagtcgtcgaaccacgccgcgagttcatccaggacaacgcgctcaac
gtcgccaatctcgacgtctag
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