Sphingomonas aerolata: NEF64_02360
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Entry
NEF64_02360 CDS
T08450
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
saer
Sphingomonas aerolata
Brite
KEGG Orthology (KO) [BR:
saer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saer03032
]
NEF64_02360 (topA)
03400 DNA repair and recombination proteins [BR:
saer03400
]
NEF64_02360 (topA)
Enzymes [BR:
saer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NEF64_02360 (topA)
DNA replication proteins [BR:
saer03032
]
Prokaryotic type
DNA Topoisomerases
NEF64_02360 (topA)
DNA repair and recombination proteins [BR:
saer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NEF64_02360 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
HC2
SHOCT-like_DUF2089-C
Motif
Other DBs
NCBI-ProteinID:
USR00728
LinkDB
All DBs
Position
complement(490840..493461)
Genome browser
AA seq
873 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGSDYRVLASYGHVRDLPPKDGSVDPDDQFAMTWENYADKSK
QLKAITDLAKTADRLILATDPDREGEAISWHVREVLRARKALPKEVERVTFNAITKATVT
EAMKNPRELDDDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVSLRLIVQRE
REIDVFKPQEYWSVTAEMEHDGTAFQARLTQFEGNKLDRLSIGNEGDALRAKQAVLDGNF
SVQTVETKPATRNPPPPFTTSTLQQEASRKLGFSADHTMRIAQGLYEDGAITYMRTDGVQ
MDGSAISAARLAVANRFDASYVPDKPRQYQSKAKNAQEAHEAIRPTDFSKDKAGGGDHAR
LYDLIFKRALASQMASARMERTTVEMADGTGRNILRATGQVVLFPGYLALYEEGADDTQD
EDARRLPRMKEGDAPAKKKVDAEQHFTQPPPRFSEASLVKRMEELGIGRPSTYASIIKTL
KDRAYVRIEKNRFFAEESGRLVTAFLERFFEKYVGYDYTAELEEELDDVSGGRAQWQSVL
DAFWRDFKPRTSEVMEQQPSAITAELDTFLAPYLFPAKADGGDPRLCPNCGEGQLALRGG
KFGAFIACSNYPECKYTRRFAQPGGDAEADAGPSTLGTHPDTGQPIERKSGRFGPYLQIG
EGEDRKMASIPKDIGELNLEWAVKLLSLPRTVGNHPETGEPIIATIGKFGPYLKHQGKYA
RLTTTADVFETGMNAAVVKLAEAAAGGGRTARGAQAPLKILGNHPRTEAEIKLMEGRYGP
YVTDGTTNATLPKSIEKDQLTLEEAASLIDARAAAAPATKKKKAPAKKPAAKKAPAKAAA
AKDGEVKAAPVKKAPAKKAPAKKAAPKKKAAAE
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtcatcgtcgaatcgcctgccaaggccaaaaccatcgagaagtatctcggc
agcgactatcgcgtgctggccagctacggccatgtccgcgacctgccgcccaaggacggc
tcggtggatcccgacgaccagttcgcgatgacgtgggagaattacgccgacaagtcgaag
cagctcaaagcgatcaccgacctcgccaagactgccgaccgcctgatcctcgcgaccgat
ccggatcgcgagggcgaggcgatttcgtggcatgttcgcgaagtgctgcgtgcgcggaaa
gcactgccgaaggaggtcgagcgcgtcaccttcaacgcgatcaccaaggcgaccgtcacc
gaggcgatgaagaacccgcgcgagctcgacgacgatctgatcgatgcgtaccgcgcccgc
cgtgcgctcgattatctggtcggcttcacgctttcgccggtgctgtggcgcaagctgccc
ggcgccaagtccgccggccgcgtccagtcggtctcgctgcgcctgatcgtccagcgcgag
cgtgagatcgacgtcttcaagccgcaggaatattggtcggtgacggccgagatggagcat
gacggcaccgcgttccaggcgcgcctgacgcagttcgagggcaacaagctcgaccgcctg
tcgatcggcaacgaaggcgacgcgctgcgtgccaagcaggcggtgctcgacggcaatttc
tcggtccagacggtcgagaccaagcccgccacgcgcaacccgccgccgccgttcacgacc
tcgacgctgcagcaggaggcgtcgcgcaagctcggcttctccgccgatcacacgatgcgg
atcgcgcaagggctctacgaggacggcgcgatcacctatatgcgtaccgacggcgtgcag
atggacggcagcgcgatttccgccgcacgcctcgcggtcgcgaaccgcttcgatgcgagc
tacgtccccgacaagccgcgccagtaccagtcgaaggcgaagaacgcgcaggaagcgcat
gaggcgatccgtcccacggacttttccaaggacaaggccggcggcggcgatcatgcgcgg
ctctacgacctgatcttcaagcgcgcgctcgccagccagatggcgtcggcgcggatggaa
cgcacgacggtcgagatggccgacggcacggggcgcaacatcctgcgcgccacagggcag
gtcgtgctcttccccggctatctcgccttgtacgaggaaggcgccgacgacacgcaggac
gaggacgcacgtcgcctgccgcggatgaaggagggcgatgcccccgccaagaagaaggtc
gatgctgagcagcacttcacgcagccgccgccgcgcttctcggaggccagcctcgtcaag
cgcatggaggagctcggcatcggtcgcccgtcgacctacgcctcgatcatcaagacgctg
aaggaccgcgcctatgtgcggatcgagaagaaccgcttcttcgccgaggaatccggccgg
ctggtgacggcgttcctcgaacgcttcttcgagaagtacgtcggctatgattacaccgcc
gaactcgaggaggagctcgacgacgtgtcgggcggccgcgcgcagtggcagtcggtgctc
gacgcgttctggcgcgatttcaagccgcgcacgtccgaggtgatggagcagcagcccagc
gcgatcaccgccgagctcgacaccttcctcgcgccgtacctgttccccgccaaggcggat
ggtggcgatccgcggctctgcccgaattgcggcgaagggcaactcgcgctgcgcggcggc
aagttcggcgcgttcatcgcgtgttcgaactatcccgagtgcaaatatacccgccgcttc
gcgcagcccggcggtgacgccgaggcggatgcgggtccgtcgacgctcggcacgcatccc
gataccggccagccgatcgagcgcaagtcgggacgcttcggcccgtatctgcagatcggc
gagggtgaggaccgcaagatggcgtcgatcccgaaggatatcggcgagctcaacctcgaa
tgggcggtcaagctgctctcgctcccgcggacggtcggcaatcaccccgagaccggcgag
ccgatcatcgcgacgatcggcaagttcgggccgtatctgaagcatcagggcaaatatgcg
cgcctcaccacgaccgcggacgtgttcgagacgggcatgaacgcggcggtcgtgaagctg
gccgaagcggcggcaggcggcggtcgtaccgcgcgcggggcgcaggcgccgctcaagata
ctgggcaaccatccgcgcaccgaggcggagatcaagctgatggaggggcgttacggcccc
tatgtcaccgacggcacgaccaatgcgaccctgcccaagtcgatcgagaaggaccagctg
acgctggaggaagccgcctcgctgatcgacgcgcgagccgcggcggcgcctgcgacgaag
aagaagaaggcgcccgccaagaagcccgcggcaaagaaggcgccggccaaggctgctgcg
gccaaggacggggaggtgaaggcggcgccggtgaagaaggcgccggccaagaaggcgccg
gcgaaaaaggccgcgcccaagaagaaggccgcagcggaatga
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