Sphingomonas aerolata: NEF64_05505
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Entry
NEF64_05505 CDS
T08450
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
saer
Sphingomonas aerolata
Pathway
saer03410
Base excision repair
saer03430
Mismatch repair
saer03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NEF64_05505 (recJ)
03430 Mismatch repair
NEF64_05505 (recJ)
03440 Homologous recombination
NEF64_05505 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saer03400
]
NEF64_05505 (recJ)
DNA repair and recombination proteins [BR:
saer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NEF64_05505 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NEF64_05505 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NEF64_05505 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
USR01297
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All DBs
Position
complement(1174158..1175909)
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AA seq
583 aa
AA seq
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MTVLGVTSSILGQPWRWRSLAADARDGFGGDDLVTQLLLARGCPREALDAHRTPSIRAFM
PDPSIFRDMDRAADRLADAVQAGEQVAIFGDYDVDGATSAALMILVLRDLGIEARAYIPD
RLLEGYGPSGEAMVRLAGEGASLIVTVDCGAQAFDALDAARDAKVDVIVIDHHKCSTALP
HALALVNPNRLDEDEGAAHGHLAAVGMCFLAAAALVRTLRTRGYFADRAEPKLIDLLDIV
ALGTVADVAQLRGLNRAFVAQGLKVMGARRNIGVAALISASRLTRNPTCTDLGFALGPRI
NAGGRVGRADLGVRLLTTQDPDEARGIAEELDRLNEERRAIETAVQEAADLLASRDRSVA
VVAGQAWHPGVIGIVAGRLKEKLGRPAIVIAIDEHGIGKGSGRSIPGVDLGAAVMAAREQ
GLLVSGGGHAMAAGLTIAEAAIPAFADFLEDRLAAAVSQSNDGRALLLDAVLAAGGVNPA
LVESMDAGGPYGMGWPAPRVAMGPVRVIKADVVGNGHVRTIVAGDDGRSVKAMAFRAAET
PLGQALLGAAPHRKLWLAGRAKIDDWASRPAAELHVEDAAWAD
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgacagttctcggtgtaacctcctcgatcctcggccagccctggcgctggcgctcgctc
gccgcggacgcgcgcgacgggttcggcggcgacgatctggtgacccagctccttctcgca
cgcggctgcccgcgtgaggcgctcgacgcgcaccgcacgccgtcgatccgcgcgttcatg
cccgacccgtcgatcttccgcgacatggaccgcgcggccgatcggctcgccgatgcggtg
caggcgggcgaacaggtcgcgatcttcggcgattacgacgtcgacggcgcgacttctgcc
gcgctgatgatccttgtgctgcgcgatctggggatcgaggcgcgcgcctatatccccgac
cgcctgctcgaaggctatggcccgtcgggcgaggccatggtccggctcgcaggcgaaggc
gcctcgctgatcgtcaccgtcgactgcggcgcgcaggcattcgacgcgctcgatgccgca
cgcgatgcgaaggtggacgtgatcgtgatcgatcaccacaaatgctcgaccgcactcccg
cacgcgctggcgctggtgaaccccaaccggctcgacgaggatgagggcgccgcgcacggc
catctcgccgcggtcggcatgtgcttcctcgctgctgccgcgctcgtccgcacgctgcgc
acgcgcggctacttcgcggatcgcgccgagcccaagctcatcgacctgctcgacatcgtc
gcgctcggcaccgtcgccgacgtcgcgcagttgcgcgggctcaaccgtgcgttcgtcgcg
caggggctgaaggtcatgggcgcgcgccgcaacatcggcgtcgcggcgctgatctcggcg
tcgcgactgacgcgcaacccgacctgcaccgatctcggcttcgcgctcggcccgcggatc
aacgccggcgggcgcgtcggccgcgccgatctcggcgtccgcctgctgacgacgcaggac
cccgatgaggcgcgcgggatcgccgaggagctcgaccgtctcaacgaggaacgccgcgcg
atcgagaccgcggtgcaagaggccgccgacctgctcgccagtcgcgaccgcagcgtcgcg
gtcgtcgccggacaggcctggcatcccggcgtcatcggcatcgtcgcaggccgcctgaag
gaaaagctcggccggcccgcgatcgtcatcgcgatcgacgaacacggcatcggcaaggga
tcgggccggtcgatcccgggcgtggacctcggcgcggcggtgatggcggcgcgtgagcag
ggcctgctcgtttcagggggcggccacgcgatggcggccggactgacgattgccgaagcg
gcgatcccggctttcgccgacttcctcgaggaccggctcgccgcagcggtctcgcagtcc
aatgacggccgcgcgctgctgctcgatgcggtccttgccgcgggcggggtcaatcctgcg
ctggtcgaatcgatggacgcaggtggcccctatgggatgggctggcccgcaccgcgcgtc
gcgatggggccggtccgcgtgatcaaggcggatgtggtgggcaatggccatgtccgcacg
atcgtggcgggtgacgacggccgcagcgtcaaggcgatggcgttccgcgccgccgagacg
ccgctcggccaggcgctgctcggcgcggccccgcaccgcaagctctggctcgccggtcgc
gccaagatcgacgactgggcatcgcgccccgcagcagaattgcacgtcgaagatgccgcc
tgggccgattga
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