Sphingomonas aerolata: NEF64_12605
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Entry
NEF64_12605 CDS
T08450
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
saer
Sphingomonas aerolata
Pathway
saer03030
DNA replication
saer03430
Mismatch repair
saer03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NEF64_12605 (dnaE)
03430 Mismatch repair
NEF64_12605 (dnaE)
03440 Homologous recombination
NEF64_12605 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saer03032
]
NEF64_12605 (dnaE)
03400 DNA repair and recombination proteins [BR:
saer03400
]
NEF64_12605 (dnaE)
Enzymes [BR:
saer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NEF64_12605 (dnaE)
DNA replication proteins [BR:
saer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NEF64_12605 (dnaE)
DNA repair and recombination proteins [BR:
saer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NEF64_12605 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
USQ99269
LinkDB
All DBs
Position
complement(2795446..2799003)
Genome browser
AA seq
1185 aa
AA seq
DB search
MHSGYVPLRVFSCYTMLDGAIDPKAIAKQARALGFPAAALTDRNGLYAAMAYSDAAKKDG
VQPVIGVMLGLSRPDMPDGIATPFDWIALYAQNAKGYDNLCALVSMAHLDRPIEMPAHVD
FAALERHADGLIALTAGGEGGLARLFAEGQPDRARAYLGRLEGLFGDRLYIELSRRGDAT
EIAAEDALIDIAYERNLPLVATNPCCFTESAFGDAHDAMLCIAHSTYVETEDRIRSCPEA
WMKPAPVMHEMFADLPEAIANTLVVAQRCAVMAPYRKPILPSLAGDIEGEAKLLRDDAEA
GLEARLARITELHGEAEDGWRDVYRARLAFEVDVIVQMGFPGYFLIVADFIKWAKDHDIP
VGPGRGSGAGSVVAWALTITDLDPIKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRY
VQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQIDRLAKLVPNHPTDPWTLERAL
NGVGELAKEYANDNGVRKLLDLAMKLEGLPRHSSTHAAGVVIGDRPLAQLVPLYRDPRSD
MPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKGVQLLAKRGIKVDLDALEWDDAGVYALL
QKGDTVGVFQLESEGMRRTLSAVRPSNFGDIIALVSLYRPGPMDNIPSFGRRKNGTETIE
YPHPALESILSETYGIFVYQEQVMQAAQILAGFSLGGADLLRRAMGKKIKAEMDAQRAIF
VEGCAKVNAIPKAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPHEFFAAS
MCYDLHQTDKLAIFTDDMRRLGIATLPPCINASQAEFDVEVLPDTEEEDSSPAKAGAQTG
SPPSRGNNLAVRYALGALKSVGEGAMEKLIVERVQNGPFAGLDDLAKRVDPRLLNKRQLE
TLAAAGAFDGFEPNRAGIHATAETILAIAARTHAAKTSGQGGLFGDAEPAGDAIKLPPSV
RWTLSQRMDQEKEAFGFYFSAHPVDRHRHIANSHGARAYTALSELNIPDDGSRAGATMAV
LVEDARYRTSARGKRFMMAQCSDASGQFMATCFDDQVSKDLEDAAKAGGCGLITVELDRK
PGEDTPRVSIKRIQPFEGLANIARFQVVVTISDMAAFAGLASLLADHRGARGEVRVRAML
PDGEVSILLGRDFLLDGELAEHIESLHGVTKVELKTSETRLALVG
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgcattccggttacgtcccgctccgcgtcttttcctgctacaccatgctcgacggcgcg
atcgatcccaaggcgatcgccaagcaggcgcgcgcgctcggcttccccgccgccgcgttg
accgaccgcaacgggctctacgccgcgatggcctattcggacgccgccaagaaggatggc
gtccagccggtcatcggcgtgatgctcggcctcagccgccccgacatgcccgacggcatc
gccaccccgttcgactggatcgcgctctatgcgcagaacgcgaagggctatgacaatctc
tgcgcactcgtctcgatggcgcatctcgaccgcccgatcgagatgccagcgcatgtcgat
ttcgccgcgctcgagcgccatgccgacgggctgatcgcactgaccgcgggcggcgagggc
ggtctcgcccggctgttcgcggagggccagcccgaccgcgcccgtgcctatctcggccgc
ctcgaggggctgttcggcgaccgcctctacatcgaactgtcgcgccgcggcgacgcgacc
gagatcgccgccgaggacgcgctgatcgacatcgcgtacgagcgcaacctgccgctcgtc
gcgaccaatccgtgctgcttcaccgagagcgcgttcggcgatgcgcacgacgccatgctc
tgcatcgcgcattcgacctatgtcgagaccgaggaccgcatccgcagctgccccgaagcg
tggatgaagcccgcgccggtgatgcacgagatgttcgccgacctgcccgaggcgatcgcc
aacacgctcgtcgtcgcccagcgctgcgcggtgatggcgccctatcgcaagccgatcctc
cccagcctcgccggcgatatcgaaggcgaggcgaaactgctccgcgacgatgccgaggcc
gggctcgaggcgcgtctcgcgcgcatcaccgaactccacggagaggccgaggacggctgg
cgcgacgtctatcgcgcgcggctcgccttcgaggtcgacgtgatcgtccagatgggcttt
ccgggctatttcctgatcgtcgccgacttcatcaaatgggcgaaggaccatgacattccg
gtcggtcccggccgtggctcgggcgcaggctcggtcgtcgcctgggcgctgaccatcacc
gatctcgacccgatcaagctggggctcctgttcgagcgcttcctgaaccccgaacgcgtg
tcgatgcccgatttcgacatcgacttctgcgaaacccgccgcggcgaggtgatccgctac
gtccaggagaaatacggccgcgaccaggtcgcgcagatcatcaccttcggtaagctgaag
gcgcgcgcggtgctgaaagacaccggccgcgtgctgcagatgagctatggccagatcgac
cggctggcaaagctcgtccccaaccacccgaccgatccctggacgctcgagcgcgcgctg
aacggcgtcggcgaactcgccaaggaatatgccaacgacaatggcgtgcgaaagctgctc
gatctggcgatgaagctggaggggctgccgcgccactcgtcgacccacgccgccggcgtg
gtgatcggcgaccggcccttggcccagcttgtgccgctctaccgcgatccgcgctcggac
atgcccgtcacgcagttcgacatgaaatatgtcgagggcgcagggctcgtgaagttcgac
tttctcgggctgaagacgctctcggtgctccagaagggcgtgcaattgctcgccaagcgc
gggatcaaggtcgatctcgacgcgctcgaatgggatgacgcgggcgtctacgcgctgctc
cagaagggcgacacggtcggcgtgttccagctcgaatcggagggtatgcgccgcacgctg
tccgcggtgcgcccgtccaacttcggcgacatcatcgcgctcgtctcgctctaccgaccg
ggcccgatggacaatatcccgtcgttcggccgccgcaagaacggcaccgagacgatcgaa
tatccgcaccctgcgctcgaatcgatcctgtcggagacctacgggatcttcgtctatcag
gagcaggtcatgcaggccgcgcagatcctcgcgggcttctcgctcggcggcgccgatctg
ctgcgccgcgcgatgggcaagaagatcaaggccgagatggacgcacagcgcgcgatcttc
gtcgagggctgcgcgaaggtgaacgccatccccaaggcgaaggccaacgagctgttcgac
ttgatcgacaagttcgccggctacggcttcaacaagagccacgccgccgcctatgcgctg
ctcgcctaccagaccgcgtggctgaaggcgcatcacccgcacgaattcttcgccgcgtcg
atgtgctacgacctgcaccagaccgacaagctcgcgatcttcaccgacgacatgcgccgt
ctgggcatcgccacgctgccgccctgcatcaacgcgagccaggccgagttcgacgtcgag
gtgctgcccgacaccgaggaagaagacagttcacccgcgaaggcgggtgcccagactggg
tccccgccttcgcggggaaacaatctggcggtccgctatgcgctcggcgcgctgaagagc
gtgggcgaaggcgcgatggagaagctcatcgtcgagcgcgtccagaacggcccgtttgcc
gggctcgacgatctcgccaagcgcgtcgacccgcgcctgctcaacaagcgccagctcgaa
acgctcgccgccgcgggcgcgttcgacgggttcgagcccaaccgcgccgggatccacgcc
accgccgagacgatcctcgcgatcgccgcgcgcacccacgccgccaagaccagcgggcag
ggcggtctgttcggcgatgcagaacccgcgggcgacgcgatcaagctgccgccgtcggtc
cgctggacgctcagccagcggatggatcaggagaaggaggcgttcggcttctacttctcc
gcgcacccggtcgaccgccaccgccacatcgccaacagccacggcgcgcgcgcctatacc
gccttgtcggagctcaacattcccgacgacggcagccgcgccggcgcgacgatggcggtg
ctggtcgaggatgcgcgctatcgcacctccgcgcgcggcaagcgcttcatgatggcgcaa
tgctcggacgccagcggccagttcatggcgacctgtttcgacgatcaggtctcgaaggat
ctggaagacgccgccaaggcgggcggctgcgggctcatcaccgtcgagctcgaccgcaag
cccggcgaggacacgccgcgcgtcagcatcaagcggatccagccgttcgaggggctcgcc
aacattgcgcgcttccaggtcgtcgtgaccatctcggacatggccgccttcgccgggctc
gcgtccttgctcgccgatcaccgcggcgcgcgcggtgaggtgcgggtccgcgcgatgctc
cccgacggcgaggtcagcatcctgctcggccgcgatttcctgctcgacggcgagcttgca
gagcacatcgagtcgttgcacggtgtgacaaaggtggagctcaagacctcagaaacgcgg
ctggctctcgtcggataa
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