Sphingomonas aerolata: NEF64_16580
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Entry
NEF64_16580 CDS
T08450
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saer
Sphingomonas aerolata
Pathway
saer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEF64_16580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saer03019
]
NEF64_16580
Enzymes [BR:
saer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NEF64_16580
Messenger RNA biogenesis [BR:
saer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NEF64_16580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
USQ99988
LinkDB
All DBs
Position
3621257..3622696
Genome browser
AA seq
479 aa
AA seq
DB search
MSFSNLGLAEPLVRALEAKGYTEPTPIQAQSIPILLEGGDLLGIAQTGTGKTAAFVLPSI
QRLTETQKRVLPTHCRMLVLAPTRELASQIADSARAYGQFSKMSVTTVFGGTSINKNRQD
LSRGVDILVATPGRLIDLIEQGFCNLSMIEILVLDEADQMMDLGFIHALKKIVRMLPKKR
QTLFFSATMPTAIRDLASQFLLDPKTVSVKPAATTAERVDQYVTFCNQSEKQALLTITLG
DPAIDRALVFTRTKHGADRVVKLLAGNGIASNAIHGNKSQGQRERALGEFKQGKVKVLIA
TDIAARGIDVSGVSHVINFELPNVAEQYVHRIGRTARAGASGIAVAFCADDEKAYLRDIE
RITRQKVTVRPLPDDFVNLSNQIKQTRVKTMGADPEVRIDRPRDPARPRATHAPRATGTT
GRNYAGASRGGQGGGGQGGGGGRPQGGGGGRPGGQGGGRPAGGGRPGGQGRGAGPSSAR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttccaacctcggcctcgccgagcccctcgtccgcgcgctcgaagccaagggc
tataccgagccgacgccgatccaggcccagtcgatcccgatcctgctcgagggcggcgat
ctgctcggcatcgcgcagaccggcaccggcaagaccgccgcgttcgtgcttccctcgatc
cagcgcctgaccgagacgcagaagcgcgtcctgccgacgcattgccgcatgctcgtcctc
gcgccgacccgcgaactcgccagccagatcgccgacagcgcacgtgcttacggccagttc
agcaagatgtcggtgaccaccgtgttcggcggcaccagcatcaacaagaaccgccaggac
ctcagccgcggcgtcgacatcctcgtcgccacgccgggccgcctgatcgacctgatcgag
cagggcttctgcaacctgtcgatgatcgagatcctcgtgctcgacgaagccgaccagatg
atggatctcggcttcatccacgcgctgaagaagatcgtccgcatgctgccgaagaagcgc
cagacgctgttcttctcggcgacgatgccgaccgcgatccgcgatctcgcctcgcagttc
ctgctcgatccgaagaccgtctccgtcaagcccgccgcgaccaccgcggagcgcgtcgac
cagtatgtcaccttctgcaaccagtcggaaaagcaggcgctgctgacgatcacgctgggt
gatcccgcgatcgaccgcgcgctcgtcttcacgcgcaccaagcacggcgccgaccgcgtc
gtgaagctgctcgcgggcaacggcatcgcctcgaacgcgatccacggcaacaagagccag
ggccagcgcgagcgtgccctcggcgagttcaagcagggcaaggtcaaggtcctgatcgcg
accgacatcgccgcacgcggcatcgacgtctcgggcgtcagccacgtcatcaacttcgag
ctgcccaacgtcgccgagcaatatgtccaccgcatcggccgtaccgcacgggcgggcgcc
agcggcatcgccgtcgcgttctgcgcggatgacgagaaggcctatctgcgcgacatcgag
cggatcacccgccagaaggtgacggtccgcccgctgcccgacgatttcgtcaacctgtcg
aaccagatcaagcagacgcgcgtcaagacgatgggcgccgatcccgaagtccggatcgac
cgcccgcgcgatcccgcgcgtccccgcgccacccacgccccccgcgcgaccggcaccacc
ggccgcaactatgcgggcgcgagccgtggcggtcagggtggcggcggccagggtggcggc
ggcggtcgtccccagggcggcggcggcggtcgtcccggcggccagggcggtggtcgcccg
gccggtggcggtcgccccggcggccagggccgcggcgccggccccagctcggcacgctaa
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