Sphingomonas aerolata: NEF64_17890
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Entry
NEF64_17890 CDS
T08450
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
saer
Sphingomonas aerolata
Pathway
saer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEF64_17890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saer03019
]
NEF64_17890
03009 Ribosome biogenesis [BR:
saer03009
]
NEF64_17890
Enzymes [BR:
saer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NEF64_17890
Messenger RNA biogenesis [BR:
saer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NEF64_17890
Ribosome biogenesis [BR:
saer03009
]
Prokaryotic type
rRNA processing factors
NEF64_17890
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Motif
Other DBs
NCBI-ProteinID:
USR02218
LinkDB
All DBs
Position
3907925..3910873
Genome browser
AA seq
982 aa
AA seq
DB search
MLIDARHREETRIAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFIDYGGN
RHGFLAFSEIHPDYYQIPKEDRDALLREEAEHAAEEAALRADYDSDDEEGDDEDDIERFE
DDGGVDPDVAEELEGGEETGEAPRRKRKPNGDEAAVEDLRERRMNLRRRYKIQDVIHRRQ
VLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAGDRKRLKSIMAD
MQLPPSMGCIVRTAGLQRSKVEIKRDFDYLARLWDGIREATLKASAPALVYGDSDLIKRA
IRDIYNKEIEEVIVEGEDGYRQAREFMRLLMPTHARRIKHYADPVPLFQRAGVEDQLSAM
YHPVVQLKSGGYLVINPTEALVSIDINSGRSTREHSIEQTATATNLEAAQEIGRQLRLRD
MAGLVVIDFIDMDNNSNVRKVEKAMKEALKNDRARIQIGRISSFGLMEMSRQRLRTGVLE
ASTRACPHCEGTGLVRTASSSGISALRLIEDEAARGRGSLLTLRASQEAAVYILNRKRAD
IAEIEDRYGVIVEIIPGQDEEGAHMTVEASGPPPAHPPKFVQIIEEDEDDLPEEIEDEIE
EDEVEEAEAEQPRRREGGREGGREQTAPREGRDADGEGGKKRRRRRGRRGRARPGEDGAV
GGTNEDGTFEDVDTNVEEIDEGVGEIVEVGGGEEIEGTTPAEQANGVEGEGRRRRGRRGR
RGGRRNEQGGEQTGTETGESIAVSSIDTAALIAEAPEPEAFAPVETSEAEPVFEEAPSAP
VAEAPKMRRRPRARAAAATINADPVAETAPKSRRGRKPRPVETADETTMAPEPVVSEVPV
TPEPQEQAAPDPVAAEPARKPARRRREAVADATMDEVGATPAETLEASAPKPKRARRKAS
DTAVEPAAVEEAPAKVAKPRGRPRKAAVIEAGDAAPTSEVLAAPVETTPPQVEVQPQDAD
APGTNDDPDGAPRRGWWQRTFG
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgacgcacgccaccgggaagaaacccggatcgccgtcgtcaagggtaaccgg
atcgaggaattcgatttcgaaagcgccgagcgcaagcagctcaagggcaacatctacctc
gccaaggtcacgcgggtcgagccgtcgctccaggcggcgttcatcgattacggcggcaat
cgccacggcttcctcgcgttcagcgagatccatcccgattactaccagatccccaaggaa
gaccgcgacgcgctgctccgcgaagaggccgagcatgccgccgaggaggccgccctgcgc
gccgattatgactcggacgacgaagagggtgacgacgaggacgatatcgagcgcttcgag
gacgatggcggggtagatcccgacgtcgccgaggagctcgaaggcggcgaagagaccggc
gaggccccgcgtcgcaagcgcaagccgaacggcgacgaggccgcggtcgaggatctgcgc
gagcgtcgcatgaacctgcgccgccgctacaagatccaggacgtgatccatcgccgccag
gtgctgctcgtccaggtcgtcaaggaagagcgcggcaacaagggcgcagcgctgaccacg
tacctgtcgctggcgggccgctactgcgtgctgatgcccaataccagccacggcggcggc
atctcacgcaagatcagcaacgcgggcgatcgcaagcgcctgaagtcgatcatggccgac
atgcagctgccgccgtcgatgggctgcattgtccgcaccgcggggctgcagcgcagcaag
gtcgagatcaagcgcgacttcgattacctcgcccgtctgtgggacgggatccgcgaagcg
acgctgaaggcgtcggcgcccgcgctcgtctacggcgacagcgacctgatcaagcgcgcg
atccgcgacatctacaacaaggaaatcgaagaggtcatcgtcgagggcgaggacggctat
cgccaggcgcgcgagttcatgcgcctgctgatgccgacgcacgcccggcgcatcaagcat
tacgccgaccccgtgccgctgttccagcgcgcgggcgtcgaggaccagctgtcggcgatg
taccatccggtcgtccagctgaagtcgggcggctatctggtcatcaacccgaccgaggcg
cttgtttcgatcgacatcaactcgggccgctcgacgcgcgaacacagcatcgagcagacc
gcgaccgcgaccaacctcgaggccgcacaggaaatcggccgccagctgcgcctgcgcgac
atggccgggctcgtcgtcatcgacttcatcgacatggataacaattccaatgtccgtaag
gtcgagaaggcgatgaaggaggcgctgaagaacgatcgtgcgcgcatccagatcggccgc
atctcgtcgttcggcctcatggaaatgagccgccagcggctgcgcaccggcgtgctcgaa
gcgtcgacgcgcgcctgcccgcattgcgagggcaccggcctggtccgcaccgcctcgtct
tcgggcatctccgcgctccgcctcatcgaggacgaggccgcccgcggccgtggttcgctg
ctgacgctgcgcgcgagccaggaagcggctgtctacatcctgaaccgcaagcgtgccgac
atcgccgagatcgaggatcgctacggcgtgatcgtcgagatcatccccggccaggacgag
gaaggcgcgcacatgacggtcgaggccagtggcccgccgcccgcgcatccgccgaagttc
gtccagatcatcgaagaggacgaggacgatcttcccgaggagatcgaggacgagatcgag
gaggacgaggtcgaagaggccgaggccgaacagccgcgtcgtcgtgaggggggccgtgaa
ggcggtcgtgagcagaccgcgccgcgtgaaggccgcgatgccgatggcgagggcggcaag
aagcgccgtcgccgccgcggtcgtcggggccgggcacgcccgggtgaggacggcgccgtc
ggtggtacgaacgaggatggcacgttcgaggacgtcgacaccaatgtcgaggaaatcgac
gagggcgtcggcgagatcgtcgaagtcggcggtggcgaggagatcgagggtacgactccg
gccgaacaggccaatggcgtcgaaggcgaaggccgtcgtcgtcgcggacgtcgcggacgt
cgcggtggtcggcgcaacgagcagggcggcgagcagaccggcaccgagacgggcgagtcg
attgccgtcagcagcatcgacaccgcggcactgatcgccgaggcgcccgagccggaggca
tttgcgccggtcgagacgtccgaggccgagccggtgttcgaggaggcgccgtccgcgccg
gtcgccgaggctcccaagatgcgtcgtcgcccgcgcgcccgcgcggccgccgcgacgatc
aacgctgacccggtcgccgaaacggcgcccaagtcgcgtcggggtcgcaagccgcgtccg
gtcgagacggccgacgagacgaccatggcaccagaaccggtcgtatccgaagtgcccgtc
acgcccgagccgcaggaacaggccgctcccgatccggtcgcggcagagccggcgcgcaag
cctgcacggcgccgtcgcgaggcggttgccgatgcgacgatggacgaggtcggcgctacg
cctgccgagacgctggaggcgtccgcgccaaagcccaagcgcgcgcgtcgcaaggcgagc
gatacggcggtcgagcccgcagccgtcgaggaggcccctgccaaggtcgccaagccgcgt
ggtcggccgcgcaaggccgcggtgatcgaggccggcgatgccgccccgaccagcgaggtg
ctcgccgcgccggtcgagaccacgccgccgcaggtcgaggtccagccgcaggacgccgac
gcgccgggcacgaacgacgaccccgatggcgcgccgcgccgtggctggtggcagcgcacc
ttcggctga
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