Shewanella aestuarii: HBH39_00875
Help
Entry
HBH39_00875 CDS
T06921
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
saes
Shewanella aestuarii
Pathway
saes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HBH39_00875 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saes03021
]
HBH39_00875 (rpoA)
03400 DNA repair and recombination proteins [BR:
saes03400
]
HBH39_00875 (rpoA)
Enzymes [BR:
saes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HBH39_00875 (rpoA)
Transcription machinery [BR:
saes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HBH39_00875 (rpoA)
DNA repair and recombination proteins [BR:
saes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HBH39_00875 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
QIR13216
UniProt:
A0A6G9QFH2
LinkDB
All DBs
Position
PN3F2:166828..167817
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVEIEQVNSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEAMLTLSKSGAGPVTAADITHDGD
VTIMNPDHIICHLTGNNDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVDLREPAAKP
EEDDKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttaaaccgcgtctcgttgaaattgagcaggttaat
tcaactcgcgctaaagttacactagagccactagaacgtggttttggccataccttaggt
aacgcgttgcgtcgcatcctattgtcgtctatgcccggctgtgcagttactgaagtcgaa
atagatggcgtactgcatgaatacagcagtaaggaaggcgtacaagaagatatccttgag
atattgttaaaccttaaaggtttagcagtaactatcgaggggaaagacgaggctatgctt
acattaagcaagtccggcgcaggccctgttacagcagcagatatcacgcatgatggcgat
gttaccattatgaatcctgatcatattatctgtcatttaacaggtaataatgatatcagc
atgcgtatccgcgttgagcgtggtcgtggttatgtgccagcttcggctcgtgcacaaact
gaagacgatgatcgcccaattggtcgcctgttggttgacgcttcattctcacctgttgct
cgcattgcatacaatgtagaagcagctcgtgtagaacagcgcacagacttagataagctc
gttattgatatgaccacaaatggtactatcgatcctgaggaggcaattcgccgctcagca
acaattttagcagaacagctagatgcgtttgttgatctacgtgagcctgcagctaagcct
gaggaagatgataagccggaattcgatccgatattgttgcgtcctgtcgacgatttagag
ctaactgtacgttcggctaactgtttgaaagccgaagcgattcattacatcggagatctg
gtacaacgcactgaagttgagttacttaaaacgccaaacttaggtaagaaatctcttact
gaaattaaggacgttttagcatctcgcggactgtcgttaggtatgcgtcttgaaaactgg
cctccagctagtttagcagacgacctataa
DBGET
integrated database retrieval system
