Shewanella aestuarii: HBH39_02145
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Entry
HBH39_02145 CDS
T06921
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
saes
Shewanella aestuarii
Pathway
saes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBH39_02145 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saes03019
]
HBH39_02145 (rhlB)
Enzymes [BR:
saes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HBH39_02145 (rhlB)
Messenger RNA biogenesis [BR:
saes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HBH39_02145 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QIR13445
UniProt:
A0A6G9QHA1
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All DBs
Position
PN3F2:456716..458023
Genome browser
AA seq
435 aa
AA seq
DB search
MSQTHLSTQKFADFPLQPAVLSALNENSFEFCTPIQALSLPILLQAKDIAGQAQTGTGKT
MAFLVATFNHLLSVAEPEGRKSTDPRAIIMAPTRELAIQIAKDANLLVKHTGLKVGIVYG
GESYETQREVLDKGVDILIGTTGRIIDYVRQGVISLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIAPLEKTSKNIKEEIFYPST
EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILE
QFTNGDLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFA
CEQYALNLPAIETYITHTIPVTNYDREALLDDLPPPVRIHRKHPTTRTRDGANKGAHRSG
GPRPPRHRANTRRHS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaacacatttatcaacacaaaaatttgctgatttcccgctgcaacccgcagta
ttatcagctttaaacgagaatagctttgaattttgtactccaatccaagcgttatctctt
cctattttattacaagcaaaagatatagctggccaggcgcaaactggtacaggtaaaaca
atggcatttttagtggccacgtttaatcatttattatccgttgcagagccagaaggtcga
aaatcaaccgatccgcgagccattattatggcgcccacccgtgaactcgcgattcaaata
gccaaagatgctaatttattggttaagcatactggtttaaaagtgggtattgtttacggt
ggcgaaagctatgaaactcaacgtgaagtactcgacaaaggtgtcgatatactcattggt
accacagggcgaattattgattacgtgcgccaaggcgtgatcagtttgaatcatattcaa
gccgtggtacttgatgaagccgatcggatgttcgatttgggctttatcaaagacattcgc
tttttattccgtcgtatgccagatgctaagtctcgcctaaatatgttgttttcagccacg
ctgtcaatgaaagtgcaagagttagcttacgatcatatgaatgatcctgaaaaagttgaa
atagcgccgctagaaaaaacctcgaaaaatattaaagaggaaattttctatccgtctact
gaagacaaaatgcgtttattactgactttgattgaagaagattggccagaaaaagccatt
gttttctcaaacaccaagcatagttgtgaaaacttatgggcacaccttgaaggtgatggt
catcgtgtcggattattaaccggtgatgttccgcaaaagaagcgtattcgtattcttgag
cagtttaccaatggtgatttagatattttggttgcaactgacgttgctgcgcgtggctta
catatttccgatgttagccatgtctataactatgatttacccgatgactgtgaagattat
gttcaccgtattggtcgtacggggcgtgccggtcaaaaaggtatttcaatcagttttgct
tgtgagcaatatgcattaaatctgcctgcaattgagacatacattactcacaccattccg
gtgactaattatgaccgcgaagctttgttagatgacctaccgccacctgtgcgcattcat
cgcaagcatccaacaactcgtacccgtgatggtgcaaataaaggcgctcatcgtagcggt
ggtcctagacctcctcgtcatagagcgaacacacgaagacattcataa
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