Shewanella aestuarii: HBH39_04165
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Entry
HBH39_04165 CDS
T06921
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
saes
Shewanella aestuarii
Pathway
saes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBH39_04165 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saes03019
]
HBH39_04165 (pnp)
03016 Transfer RNA biogenesis [BR:
saes03016
]
HBH39_04165 (pnp)
Enzymes [BR:
saes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HBH39_04165 (pnp)
Messenger RNA biogenesis [BR:
saes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HBH39_04165 (pnp)
Transfer RNA biogenesis [BR:
saes03016
]
Prokaryotic type
tRNA degradation factors
HBH39_04165 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
KH_KhpA-B
aRib
Motif
Other DBs
NCBI-ProteinID:
QIR13794
UniProt:
A0A6G9QGW9
LinkDB
All DBs
Position
PN3F2:896813..898909
Genome browser
AA seq
698 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVE
PQIEPDIISMIGTSAALAISGIPFNGPLGAARVGYINGEYLLNPSVDQVAQSDLDLVVAG
TQSAVLMVESEAKSLAEEIMLGAVTYGHEQQQVVIDAIAEFKAEAGKPIWDWTAPVQDQD
LVAKIKDLAEVGMTEAYQIEVKQDRYAQVGVVKAAAKAALVAENPDVDQREVDNLLGSLE
KNIVRSRILSGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSN
GEATKEAIRRIEEITAEVEVGRVYKGKVIRIVDFGAFVNILPGKDGLVHISQISEERVAN
VSDHLEMNQEVEVKVMEVDRQGRVRLSIKEAQTKEAAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctatcgtaaagagttttgagtatggtcaacatacagtcaccttagaaacaggt
gttattgcacgtcaagctgatgcagcggtattagcaagcatgggtgatacaactgtcctt
gtcactgttgttggtaaaaaggttgcggatttaagccgtgatttcttcccattgacagtt
aactatcaagagaaaacatacgcagcgggtaagatccctggcggtttctttaagcgtgaa
ggtcgtccatcagaagatgaaactttgattgcacgtcttattgaccgtcctattcgtcct
ttatttcctaacggttttaaaaatgaagtacaggttatcattactgtagtatccgttgaa
ccacaaattgagcctgacattatctcaatgattggtacttctgctgcacttgcgatatct
ggtattccatttaatggcccactaggtgctgcacgtgttggttatatcaatggtgaatac
ttacttaacccttcagtcgatcaggttgctcaaagcgacttggatctggttgtagcgggt
acgcaaagtgcggtattgatggttgaatctgaagcgaaatcacttgccgaagaaatcatg
ttaggtgctgtaacttatggtcatgagcaacagcaagttgttattgatgctattgctgaa
tttaaagcggaagctggtaaaccaatttgggattggactgcaccagttcaagaccaagac
ttagtagctaaaattaaagatttagctgaagttggtatgacagaagcttatcaaattgaa
gttaagcaagatcgttatgcgcaagttggtgttgttaaagccgctgctaaagctgcactt
gtagccgagaatcctgatgttgatcaacgtgaagttgataacttacttggtagcttagag
aaaaatattgttcgcagtcgtatccttagtggcaagccacgtatcgacggtcgtgaacct
gatatgatccgcgcattaagcgtgctagctggtgtacttccacgtactcacggtagctca
ttgtttacacgtggtgaaacgcaagcattggtaacatgtactctaggtacagagcgtgat
gcacaaaaaattgatagcatcatgggcgagcgtactaatcgctttatgcttcactataac
ttccctccttactcggtgggtgaaacgggtatggtgggttctcctaagcgtcgtgaaatt
ggtcacggtaagttagcgtggcgtggtatcaatgctgtgatgccttctgctgaagaattc
ccatatagcatccgtgtggtttcagaaattactgaatctaacggttcaagctctatggct
tctgtttgtgggacttcattagcattgatggatgccggtgtacctattaagtcttctgtt
gctggtatcgctatgggtctagtgaaagaaggcgatgactttgttgttctttctgacatt
ctaggtgatgaagatcacttaggtgacatggactttaaagtcgctggtactcgtgatggt
attacagctttacagatggatatcaagattgaaggtattactaaagaaatcatggacatt
gctttacagcaagcttacggtgctcgtgttcatattcttaatgtaatggatcaagctatt
ggttcacatcgtgatgatatctctgatcatgcgccgcgtatcacaacgatcaagattaat
cctgagaaaatccgtgatgttattggtaaaggtggtgcaacgattcgtgcacttactgaa
gaaaccggtacaacgattgagttagatgatgatggtacagtgaaaattgcatcttcaaat
ggcgaagcaaccaaagaagctattcgtcgtattgaagaaatcactgctgaagttgaagta
ggtcgtgtttataaaggtaaggttattcgtatcgttgactttggtgccttcgttaatatc
cttcctggtaaagatggtttagtccacatttcacaaattagtgaagagcgtgtcgctaac
gtttctgatcatcttgaaatgaaccaagaagtagaagttaaagtgatggaagttgaccgt
caggggcgcgttagactttctatcaaagaagcacaaactaaagaagcagctgaataa
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