Shewanella aestuarii: HBH39_04425
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Entry
HBH39_04425 CDS
T06921
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
saes
Shewanella aestuarii
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saes03021
]
HBH39_04425 (rpoS)
Transcription machinery [BR:
saes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HBH39_04425 (rpoS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_11
MarR_2
Calici_PP_N
Fe_dep_repress
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
QIR13841
UniProt:
A0A6G9QIY5
LinkDB
All DBs
Position
PN3F2:956122..957090
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AA seq
322 aa
AA seq
DB search
MSQKNSAAFAEQDQAKQPYDVAANADNTLVQQLEIEEKVQDDLQKNLDATQLYLGEIGFS
PLLTAEEEVFFSRKALKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLI
RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARQLAQK
LDHEPTAEEIAEKLDVSTGDVSRMLKLNERITSVDMPLGGDNDKALLDVIADDDSLGPDH
RVQDEDLSNSIVGWLNELNTKQREVLARRFGLLGYEPSTLENVGAEIGLTRERVRQIQVE
ALKRLKDLLGQQGLSVEALFRD
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaaagaatagcgctgcgttcgcagaacaggatcaagctaaacaaccatacgac
gttgcagcaaacgctgacaatactttagttcaacaacttgaaattgaagaaaaagtacaa
gacgaccttcaaaaaaatcttgatgccactcaattatatttaggtgaaattggattttct
ccactgctaaccgcagaagaagaagttttcttttcacgtaaagccctcaaaggttgcgaa
aaatctcgcaatcgtatgatagaaagtaaccttcgtctcgttgttaaaattgccagaaga
tataataaccgcggtttagcattactggaccttattgaagaaggtaacttaggattaatt
cgtgcggttgagaaatttgacccagaacgaggatttcgtttctctacttatgcgacttgg
tggatccgtcagaccattgagcgcgccataatgaatcaaacacgcacgattcgtttgcct
attcatgttgttaaagagcttaatgtgtatttacgcactgcaagacaacttgctcaaaaa
ctcgatcacgaacctacggctgaagaaattgccgaaaaactagatgtctcaactggtgat
gttagtcgcatgctaaagctaaatgagcgcattacctcggttgatatgccattaggcggt
gataatgacaaagccttattggatgtcattgccgatgatgactcgctcggtcctgatcac
cgtgttcaagacgaagatttatctaattcgattgttggttggttaaacgagttaaatacc
aaacaacgtgaagttctggctcgccgatttggtttattgggttatgaaccttcgactctt
gaaaatgtaggcgctgaaattggtttaacacgtgaacgtgtccgtcaaattcaagttgaa
gcattaaagcgtcttaaagatcttcttggacaacaaggattatcagtagaagctttgttt
agagattaa
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