Shewanella aestuarii: HBH39_06860
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Entry
HBH39_06860 CDS
T06921
Symbol
sbcD
Name
(GenBank) exonuclease subunit SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
saes
Shewanella aestuarii
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saes03400
]
HBH39_06860 (sbcD)
DNA repair and recombination proteins [BR:
saes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HBH39_06860 (sbcD)
Archaeal homologous recombinant proteins
HBH39_06860 (sbcD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Metallophos_3
FBPase_2
Motif
Other DBs
NCBI-ProteinID:
QIR14238
UniProt:
A0A6G9QIL3
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All DBs
Position
PN3F2:1519864..1521141
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AA seq
425 aa
AA seq
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MRIIHTSDWHLGQHFFGKSRGAEHQAFMQWLLAQIAEHQVDALIVAGDIFDTGTPPSYAR
ALYNQFIVQMQQAECQLIILGGNHDSVSMLGESKELLACLNTKVIPGAYDTPEEHVFVVN
NRQGEPGALICGLPFLRPRELVKSNMGESAKDKQLKLGNAIADYYQASYQQAQSLNQQYL
DTLGRRLPIVATGHLTTVGASTSESVRDIYIGSLDAFNAQLFPPADYIALGHIHRPQSIA
KTDHIRYSGSPLPLSFDELNKDNQANKSVFLVEFDHQCQLSLTTLAVPMFQPMQYLTGNL
AFIEQQIAGLADIYTATESSSAFSQTWLSIEVTEQDFLSDLQNRIAAMTANKAVEVLQLK
RARGRQQSTMTKHQNETLDELSVSEVFQRRLAQEQIDDEAFKVRICQRFEQVVEEVKLEQ
QEAQS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattattcatacttctgattggcatctaggccaacacttttttggcaaaagccga
ggcgctgagcatcaagcttttatgcagtggttgttagcccaaattgctgagcatcaagtt
gatgcgctaattgtcgctggtgatatttttgatacaggcacgccgccaagttatgcccgc
gcattatacaaccagtttatcgtgcaaatgcagcaggctgagtgtcagctgattatatta
gggggcaatcatgattcggtatctatgcttggtgaatctaaagagttacttgcttgctta
aataccaaggtgatccccggcgcttatgacactcccgaagaacatgtttttgtggtcaat
aaccgtcaaggcgaacccggtgcgctgatttgtggtttgccttttctgcgtccccgtgaa
ttagtcaaaagtaatatgggcgagtctgcaaaagataaacagctaaaactaggcaatgcc
attgccgactattatcaggccagttaccagcaggctcaaagtctgaatcaacaatacctt
gacactttaggccgccgcttaccgatagtggcaacgggtcatttaaccaccgttggcgcc
agtacttcagaatcagtcagagatatatatattggcagtttagatgcctttaacgctcag
ttgtttcctcctgcagattacattgcccttgggcatattcatcgtccacaaagcattgct
aaaactgatcatattcgttatagcggttcaccattaccattaagctttgatgagctaaac
aaagataatcaggccaataaaagtgtttttttagtggagtttgatcatcaatgccaactg
agtttaaccacattggctgtgccaatgttccagccaatgcaatatctgacaggtaatttg
gcctttattgagcagcaaatcgcaggacttgcagatatttacaccgctacagagtcaagc
tctgctttcagtcaaacttggctaagtattgaagtcacagagcaagattttttgtccgat
ttacaaaaccgcatagcagccatgaccgcaaataaagccgttgaagtattacagttgaaa
cgggctcgtgggcgacaacaatcgactatgacaaaacaccaaaatgaaaccttagatgaa
ttatcggtcagtgaggtgtttcagcgccgtttagctcaagagcagattgatgatgaagcg
tttaaggtccgtatttgtcagcgcttcgagcaagtcgtcgaagaggtcaaacttgagcaa
caggaggcgcaatcatga
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