Shewanella aestuarii: HBH39_06865
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Entry
HBH39_06865 CDS
T06921
Name
(GenBank) AAA family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
saes
Shewanella aestuarii
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saes03400
]
HBH39_06865
DNA repair and recombination proteins [BR:
saes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HBH39_06865
Archaeal homologous recombinant proteins
HBH39_06865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
SMC_N
DUF4844
DUF87
Motif
Other DBs
NCBI-ProteinID:
QIR14239
UniProt:
A0A6G9QK44
LinkDB
All DBs
Position
PN3F2:1521138..1524881
Genome browser
AA seq
1247 aa
AA seq
DB search
MKILSLRFKNINSLQDEWKIDFSQSPFAENGLFAIIGPTGSGKTTILDAICLALYHRTPR
LSVISKTTNELMTRGTSECLAEVEFEVKGVGYRAFWSQRRARDNADGNLQDAQVELAKMA
DGKIIASQIKRKAELIEQITGLDFARFTKSMMLSQGEFAAFLNADANVRAELLEELTGTE
IYGQISERVHQHFSQSKQALALLESQIGHVKLLSDDQISDNQQQQQALSKELSQIELTLT
KYQAFLLWLTDKEQADKQLLLCQNALLDAQQALDEQQTALQKLADSEPAEKLLTLYERQS
QLADKVALVEKQINEISEHLQQTEQELATSEPLTAQLQTELKAAKQQYQQLVQLIDNQVV
PLDHDIEVLTQQVQQQQANCDQTSRQQQTLRQEQQQISQQITLINEQNSALMPQVSAYPK
GELICQHISGWQTQLSQLQQQHAQLTNIDTEINQTNSQLLENEQSTAQLQTTIQVLNQQA
VDEAQRLETLEQQITTLLNGQSERALTQQYQQLLAQQGQRVQLTQLYTQYTHAENEQQQL
THQLGQLSDTISQQEQMLAQTRQAWSDKNQQVKDVQQLLKQERHIADLTHERAKLVEGQP
CALCGSTSHPLVEQYQAINLSQTEQRELSLQAELDDLKTKGEQQKHRLTEYTVEQKNKQQ
QLQKLVEQINNTLNQAAQLAASLSFAGDFTQPNVQSLLTQFTENKQFEQQTLAETLDKLT
QQNELKSQLIEQKAHNDKKLQQTTNQLQLLTQQTASAQQFLERQYQQIADLIAEKNTILL
NLNHQANACGLELPTHVTQTTGARLSESVTLAELTFWLSGLSVSMQQWQQASQGLLDNRQ
QLAMLQQKDEQLQLQVAALIQQQQAGEQNLQQLQQSRQQKIAQRIALFGDKKTQTEKHKV
EQAIAQGEQQLQTQVELLQQIQSRRNTQSTQLQSLQAQLQQVKDEHSQSHSQWTQALELS
PFENAADFKQALISPQQRQSLQALKQSLDSQLHERKVLLTQTQKQQQTLQHQAAENQYKL
TDAPLITQQNLALKEQQQSLQQNLWQLRHTIKQDEELRKHQSELLACYDNAKQQYDEVAY
LHALIGSQKGDKFRKFAQGLTLDHLVALANRQLGRLHGRYQLQRKDSEALELQVLDTWQA
DAVRDTRTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDSQTLDIALDALD
NLNASGKMIGVISHIEAMKERIAVQIKVHKMNGLGVSKLQKEFAIAK
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatattgagcctgcgttttaaaaacatcaattcattacaagatgaatggaaaatt
gacttcagccaaagcccatttgccgagaatggcttatttgccattattggcccgacaggc
tcaggtaaaaccaccattttagatgctatttgcttggcactgtatcatcgcacaccgcgt
ttatcggtgatttctaaaaccaccaatgaactcatgacgcgtggcacgagtgagtgttta
gctgaagtggagtttgaagtaaaaggggtgggatatcgggctttttggagtcaacgtcgt
gcacgcgataacgctgatggcaatttacaagatgctcaagttgaattggcaaaaatggcg
gatggtaaaattattgccagtcaaatcaagcgaaaagcagagttaatcgaacaaataacg
ggtttagactttgcccgatttactaagtcgatgatgttgtctcaaggtgagtttgccgcc
tttttaaatgccgatgccaatgtacgtgcagaattacttgaagagctaacgggcacggaa
atttatggtcaaatatctgaaagagtgcatcagcactttagtcaatcaaagcaagcatta
gcattacttgaaagccaaataggtcatgttaagttgctaagcgacgatcaaataagtgat
aaccaacagcagcaacaagctcttagcaaagaactaagtcaaatagagcttactttaacc
aaatatcaggcatttttattgtggttaaccgataaggagcaagcggataagcagttattg
ctttgccaaaatgccttactagatgcgcagcaggcgctggatgaacaacaaacagccttg
caaaagttggccgatagtgaacccgctgaaaagctgttaaccttgtatgagcgtcaatcg
caacttgccgataaagtggcattagttgaaaaacaaataaatgaaatcagtgaacatttg
caacaaaccgagcaggagcttgctactagcgagcctttgaccgcgcagctgcaaactgag
ctaaaagccgctaagcaacaatatcagcaattagtacagttaatcgataaccaagttgta
ccacttgatcatgatattgaggtgttaacacagcaagttcagcagcaacaagccaattgt
gatcaaactagccgtcagcagcaaacactaagacaagaacagcagcagatttctcagcaa
attacccttattaatgagcaaaacagcgcattaatgccacaagtttctgcctaccccaaa
ggggagctaatttgccaacatatcagtggctggcaaacccaattaagtcagttgcagcaa
cagcacgcccaattaaccaatattgataccgaaattaaccaaacaaacagccaattgctt
gaaaatgagcagagcactgcgcaattacaaacgacgatacaagttttaaatcaacaggct
gttgatgaagcccagcggcttgaaacccttgaacaacaaattacgacgttattaaatggt
caatcagagcgagcgttaacccaacagtatcagcaattgcttgcccagcaggggcagcgc
gttcaattaacgcagctttatacacaatatactcatgcggaaaatgaacaacagcagtta
actcatcagctcggacaacttagcgatacgattagtcagcaagagcaaatgttagcgcag
acgcgacaagcatggtcagataaaaatcaacaggttaaagatgttcaacagctgctaaag
caagagcgtcatattgcagacttgacgcatgagcgagctaaattagttgaaggccaacct
tgtgcgctttgtggctcaaccagtcatccgcttgttgagcaatatcaagccatcaactta
tcgcaaactgagcagcgagaattaagcttgcaagctgagttagatgatttaaaaactaaa
ggtgagcagcagaaacatcgcttaaccgaatacaccgtggagcagaaaaataaacagcag
caattacaaaagcttgtcgaacaaattaacaatacattaaatcaggctgcacaattggct
gcgtcattatcatttgctggtgattttacccagccaaatgtacaaagcttattaactcag
ttcactgaaaataagcagtttgagcagcaaacccttgctgagacattagacaaactgacc
cagcaaaatgagctcaaaagtcagctcattgagcaaaaagctcacaatgataagaagttg
cagcaaacgaccaatcaacttcaactgctcacgcaacaaacagcttctgcacagcagttt
cttgaacgccagtatcagcaaatagcagaccttattgccgaaaaaaatacaatattactc
aatcttaatcatcaagctaacgcttgtggtttagagctgccaactcatgtaactcaaaca
actggggcaaggttaagcgaaagtgtaactttagctgaattaaccttttggttatccggt
ttatctgtttcaatgcagcaatggcaacaagcgagtcaaggtttgcttgataatcgccag
caattagccatgttgcaacaaaaagatgaacagctacaactgcaagtcgcagcgctgatt
caacagcagcaagccggtgagcagaacttgcagcagttacaacaaagcaggcagcaaaaa
atcgctcagcggatagcgctatttggtgataaaaagactcaaacagaaaaacataaagtt
gagcaagccattgcccaaggtgagcagcaattgcaaactcaagttgagttattgcaacag
attcaatctaggcgcaatacacaatctacccaattacaaagcttgcaagcgcagttacaa
caagtgaaagatgagcatagccaatcacatagtcaatggacacaggcgcttgagcttagc
ccatttgagaatgctgcagactttaagcaagcgttgatttcccctcagcagcgtcaatca
ctgcaggcattgaaacaatcacttgatagtcagcttcacgaacgcaaggtattactcaca
caaacccaaaagcaacagcaaactttgcaacaccaagcggctgaaaatcaatataaatta
accgatgcgccactgatcactcagcagaacctcgcactgaaagagcagcaacaaagtctg
cagcaaaacttatggcaattgcgacatacaatcaaacaagatgaagagctgcgtaaacat
caaagtgaactattagcctgctatgacaatgcaaaacagcagtatgatgaagtggcctac
ttgcatgctctgataggctctcaaaaaggcgataaattccgtaagtttgctcaagggcta
accctagatcatttggttgccttagctaatcgtcaattaggtcgtttacatggccgctat
caattgcagcgtaaagatagcgaggcactggaattgcaagtgctagacacttggcaagcc
gatgcagtgcgagatacgcgcactttatcgggcggagaaagctttttagttagcttggct
ttggctttggctttatctgatttggtcagtcacaaaaccagtattgattcgttattttta
gatgaaggttttggtaccttagacagccaaaccttagatatcgctttagatgcattagat
aatttaaatgcatcaggcaaaatgattggtgtgattagtcatattgaggcgatgaaagag
cgcatagccgtacaaattaaagtacataaaatgaatggacttggcgtaagtaaactacaa
aaagagtttgcaattgcaaagtaa
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integrated database retrieval system
