Shewanella aestuarii: HBH39_09695
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Entry
HBH39_09695 CDS
T06921
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
saes
Shewanella aestuarii
Pathway
saes03030
DNA replication
saes03430
Mismatch repair
saes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HBH39_09695 (holB)
03430 Mismatch repair
HBH39_09695 (holB)
03440 Homologous recombination
HBH39_09695 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saes03032
]
HBH39_09695 (holB)
03400 DNA repair and recombination proteins [BR:
saes03400
]
HBH39_09695 (holB)
Enzymes [BR:
saes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HBH39_09695 (holB)
DNA replication proteins [BR:
saes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HBH39_09695 (holB)
DNA repair and recombination proteins [BR:
saes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HBH39_09695 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DUF4350
Motif
Other DBs
NCBI-ProteinID:
QIR14725
UniProt:
A0A6G9QKY2
LinkDB
All DBs
Position
PN3F2:complement(2153879..2154838)
Genome browser
AA seq
319 aa
AA seq
DB search
MTDYALTQLPWLQMPFERFAQLCYQNRHSHAQLLPVDEALGGYYLANEMAQMALCLNKTP
FGACQQCKSCLLYKSGNHPDVHWVRKDGAQIKVDQIRELCQSLLHTAQQGGARIAVIENS
ERMNTAAANALLKTLEEPGDNTLLILQTDTPASLLPTITSRCQKIAFIAPQKSDIVKWLD
EQHLLPRPDAQGKRHDVTWCLGVVGGPLKLADSLSSKHYQQLLDYRQDWAASLKNGHLQN
SLLKLSEQQIIDALKVLYLYLRQYVLKSTKLDPLNQAKVIELAGSVMQMSHKLATMANVN
TQALCQQYLLQFRHLLALS
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgactgactatgctttaacacaactgccatggttacaaatgccgtttgagcgttttgct
cagttgtgctatcaaaatcgtcatagtcatgcgcaattattgccggtggatgaggcctta
ggtggctattatttggcaaatgagatggcgcaaatggcgctttgtttaaacaaaacccca
tttggggcttgtcagcagtgtaagtcttgtttgctttataaatccggtaatcaccctgac
gtccattgggtacgcaaagatggcgcgcaaattaaagtcgatcaaatccgcgaactctgt
caatcgttactgcataccgctcagcaaggtggcgctagaatcgctgtcattgaaaacagt
gaaaggatgaatactgcagcggcgaatgcattattaaagaccttggaagagccgggagat
aataccctgctgattttgcaaaccgatactccagctagtttactgccgacaattaccagt
cgctgccaaaaaattgcttttatcgccccccaaaaaagcgatatcgttaagtggctagat
gaacaacacttattgccacggccagacgctcaaggaaagcgccatgatgtgacttggtgt
ttaggtgtggtcggtgggccgttaaaactggctgatagcttatcctcaaagcactatcag
caattgctagattatcgtcaagattgggcggcaagtttaaaaaatggccatttacaaaat
agcttattgaagttgtcggaacaacaaattattgatgctcttaaggttttatatttgtac
ttaagacaatatgtgttaaaaagtactaagctagatccattaaaccaagcaaaggtcatt
gagttagcgggaagtgtcatgcaaatgagccataaattagctacaatggcgaatgtgaac
acacaagcattatgtcagcaatatctactgcaattcaggcatttactggccctatcatag
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