Shewanella aestuarii: HBH39_10230
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Entry
HBH39_10230 CDS
T06921
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
saes
Shewanella aestuarii
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saes03032
]
HBH39_10230 (topA)
03400 DNA repair and recombination proteins [BR:
saes03400
]
HBH39_10230 (topA)
Enzymes [BR:
saes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HBH39_10230 (topA)
DNA replication proteins [BR:
saes03032
]
Prokaryotic type
DNA Topoisomerases
HBH39_10230 (topA)
DNA repair and recombination proteins [BR:
saes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HBH39_10230 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
YjeF_N
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QIR14818
UniProt:
A0A6G9QKA8
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All DBs
Position
PN3F2:complement(2274362..2277022)
Genome browser
AA seq
886 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSSSDGTPPAKTAAEVRKMSP
EEKAKYKQARDKQALVARMGINPEKGWAAKYQVLPGKEKVVKELKALAESADQIYLATDL
DREGEAIAWHLQEIIGGDASRYQRVVFNEITKTAIQDAFSKPATLDTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVEREGEIKAFVPEEFWDIHAELNTSKAE
KLKMQVAKFQSAAFEPINEAQAQLAVDALKGASYTVSNREDKATSSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVREMIANEFGAKYLPADP
IRYGSKEGAQEAHEAIRPSNVAVQSANLSDMERDAQRLYELIWRQFVACQMTPAQYDATR
LTVTAGDYELKASGRTLRFDGWTRVQPPMSKKNEDDSTLPVVEIGDKLTLDQLLPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVRVDNRRFFAEKMGEIVSERLV
ESFKDLMSYDFTASMEQTLDDVAHGKLDWKKVLDGFYGDFTKQLLLAELDPSEGGMRLND
PVLTDIECPTCGRKMGIRTGSTGVFLGCSGYALPPKERCKTTLNLTSGDEAISDTEDGET
DALRAKHRCGKCGTAMDSYLIDEARKLHVCGNNPSCDGYEIEQGQFKIKGYDGPIIECDR
CGHDMELKNGRFGKYFGCTNSECKNTRKLLKNGEAAPPKEDPIFLPELKCTKSDAHFVLR
DGAAGIFLAASTFPKSRETRAPLVEELVKYKDLLWDKYAYLADAPTEDDDGNKSVVKFSR
KTKEQYVASEIDGKATGWSAKFVGGKWVTESPKTAKKTTKKATKKS
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcgccggccaaagccaagacaattaataaatat
cttggtaaagaattcatcgttaagtcgagtgttggtcacatccgtgatttgccgacttct
tcctcttctgatgggacaccaccagccaaaactgctgctgaagtgagaaaaatgtcccca
gaagaaaaagctaaatataagcaggctagggataaacaagcgcttgtagcccgaatggga
attaaccctgaaaaggggtgggcagccaaatatcaggtattgcccggaaaagaaaaagtt
gtcaaagaattgaaagcccttgcagagtcagctgaccaaatctatctcgcaaccgatttg
gaccgtgaaggggaagccattgcctggcatttacaggaaattattggtggtgatgcttca
cggtatcaacgagtggtatttaacgaaattaccaaaactgcgattcaagatgcatttagt
aaacctgctactctagataccaatatggttaatgcgcaacaagcgcgtcgattccttgac
cgtgttgttggtttcatggtgtcaccactgttgtggaaaaaagtggctcgtggtttatct
gctggtcgtgtgcaatctgttgccacacgtttagtcgttgaacgcgagggtgaaattaag
gcatttgttcccgaagagttttgggatatccatgccgaattaaataccagcaaagctgaa
aagctaaaaatgcaggtggctaaatttcagtcagcggcgtttgagccaattaatgaagct
caagcccaactggctgttgatgcattaaaaggtgcgtcttacacagttagtaatcgtgaa
gataaagctacctcaagtaagccatcggcgccttttatcacctcaacattacagcaagcg
gcaagtacccgtttgggttttggtgttaaaaaaaccatgatgatggctcagcgcctttat
gaagctggccacattacttatatgcgtaccgactcaactaacttgagccaagaagcatta
gacagcgttcgtgaaatgattgcgaacgaatttggtgccaaatatctacctgctgatcct
attcgttatggcagcaaagagggagctcaggaagcgcatgaagccattcgtccatctaat
gtggctgtgcaatctgcaaatttgtctgacatggagcgtgatgcgcagcgtttgtatgag
ctaatttggcgtcaatttgttgcttgtcagatgacgccagctcaatatgatgcgacacgt
ttaacggtaacggcgggtgactatgagctaaaagccagtggccgtacattgcgatttgat
ggttggacacgcgttcagccaccaatgagcaagaaaaatgaagatgatagcacactccca
gttgttgaaattggcgataagttaacactcgatcaacttttacccaaacagcactttacc
aagcctcctgcacggtacagtgaagcatcattagttaaagaactggaaaaacgtggtatt
ggccgcccatcaacttatgcaaccattatttcaaccattcaagaccgtggatatgtgcgt
gttgataatcgccgtttctttgctgaaaaaatgggcgagattgtcagcgagcgtttagtc
gaaagctttaaagatctcatgagctatgatttcaccgctagcatggagcaaactctcgat
gatgttgcccatggcaaacttgattggaaaaaagtgcttgatggtttctatggtgatttt
accaagcagttattattagcagagcttgatccatcagaaggcggaatgcgtctaaatgat
cccgtactaactgatattgaatgcccaacatgtggtcgcaaaatgggtattcgtactggc
tcaacaggggtgttcttaggctgttcaggttatgccttgccgcctaaagagcgttgtaaa
accacactaaacctcacatctggtgatgaagctattagcgatactgaagatggcgagacc
gatgccttacgtgctaagcatcgctgtggtaaatgtggtaccgccatggatagctactta
atcgatgaggcgcgtaaattacatgtttgcggtaacaacccaagctgtgatggttacgaa
atcgagcaaggtcaatttaagattaagggttatgacggcccaattatcgaatgcgatcgt
tgcggccatgacatggaacttaaaaacggccgttttggtaagtattttggttgtactaat
agcgagtgtaaaaacacccgtaagctgttaaaaaatggcgaagctgcgccaccaaaagaa
gatcctatctttttgcctgagctaaaatgtaccaagtcagatgcacactttgtgttacgt
gatggtgcagcagggatattccttgccgcaagtaccttccctaagtctcgcgaaactcgc
gcgccgttagttgaagagctggtgaaatataaagacttactttgggataagtatgcttat
ttagctgatgcgccaactgaagatgatgacggtaataaatccgtggttaaatttagtcgc
aaaactaaagagcagtatgttgccagtgaaattgacggcaaagcgaccggttggtctgcc
aagtttgtaggtggcaagtgggttacagagtcacctaaaacagcaaaaaaaaccactaaa
aaagccactaagaagtcgtaa
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